Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g16r
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit Rsm2...    27   2.2  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    27   2.2  
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom...    27   3.8  
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom...    26   5.0  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   6.6  
SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|...    25   8.8  
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.8  
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ...    25   8.8  

>SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit
           Rsm25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 22/67 (32%), Positives = 32/67 (47%)
 Frame = -3

Query: 379 WFNTGGTMQFTFDVKRNLVPTFAPPSKVASQMNQLPKLLESCKLLNQDYEDARRLRDMLE 200
           W+ T      TF   R +VP +  P+KV S+  +L K +   + + Q  ED  R R   +
Sbjct: 27  WYETVAKHPPTFQYARRIVPLY-DPNKVKSRGKRLRKSMYQPQEI-QWPEDKLRKRFYRD 84

Query: 199 RKPELAR 179
              ELAR
Sbjct: 85  HPWELAR 91


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 22/101 (21%), Positives = 39/101 (38%)
 Frame = +3

Query: 264 SNLGNWFICEATLLGGANVGTKFRFTSNVNCIVPPVLNQFSSTTVSNKHRSTLVANCARS 443
           S LGN  +  A     A  G     T+N     P      ++ T      +T  +N + S
Sbjct: 120 SVLGNLVLKVAPSKIRAPAGNHSSTTANRTTSTPTTTTARTTRTTPRPTATTNTSNQSTS 179

Query: 444 LTARQGASRALTDDSRALSPDSGAHRAGDTVSASSSTTGRL 566
            + R G S A ++ +   +    +HR+    +  ++ T  L
Sbjct: 180 NSTRNGTSAATSNGTGTGAGTGASHRSSPVTNRQTNNTSAL 220


>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
           Msp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 903

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
 Frame = -3

Query: 748 IANLAVTXLLSGD-EDMEEAGVFAEAPALLSRLLNAALDAISE--HITLE-FKASIRDYK 581
           ++ L VT  +S   +++ +A  FA+ PA +  ++NAA D +    H T E  +  ++ YK
Sbjct: 645 VSTLLVTDSISKCIDEITKASPFADHPAAMQYIMNAAQDILRRRFHATSEQVENCVKPYK 704


>SPAC6F6.12 |||autophagy associated protein
           Atg24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 401

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 1/86 (1%)
 Frame = -3

Query: 346 FDVKRNLVPTFAPPSKVASQMNQLPKLLESCKLLNQDYEDARRLRDMLERKPE-LARDFL 170
           FD++R+ V  F     +++    + KLL   K L  DYED     D L    + L     
Sbjct: 176 FDIQRDHVQQFM--FGISNLEGSIQKLLRLEKALESDYEDVSIQFDRLASLDQALDVPIE 233

Query: 169 GNQGITSITGMEALQILNQRTDLCDT 92
             Q     TG E   +  + T L DT
Sbjct: 234 SIQNALQQTGTEYANLTEKLTLLLDT 259


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -3

Query: 400  ETVVLENWFNTGGTMQFTFD-VKRNLVPTFAPPSKVASQ 287
            ETVVL+N+ N   +++F  D ++  L+P F   +   +Q
Sbjct: 1122 ETVVLDNFENGEESLKFILDFMQSQLIPAFLVTTDTKAQ 1160


>SPCC11E10.04 |||mitochondrial ATPase expression protein
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 443

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/63 (17%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = -3

Query: 448 VRLRAQLATNVDRCLFETVVLENWFNTGGTMQFTFDV--KRNLVPTFAPPSKVASQMNQL 275
           +R+   L  N+ +C F+ ++ + + +T    +  +D+   +  +P+ +P +    +++  
Sbjct: 1   MRILGSLPNNIRKCTFKLILQKRYSHTDILKELLYDISDSQKFIPSASPIASNLLRVSSY 60

Query: 274 PKL 266
            KL
Sbjct: 61  GKL 63


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
 Frame = +3

Query: 384 SSTTVSNKHRSTLVANCARSLTARQGASRALTDDSRALSPDSGAHRAGD--TVSASSSTT 557
           SS+T S+   S+     + S+T+   +S + +  S + S  SG+  + D  TVSASS++T
Sbjct: 151 SSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSSAS-SSGSISSADAKTVSASSNST 209


>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 180

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 220 VERPRSPGSGVYRTRATWAIGSFAR 294
           V RP SP   +Y  + TW + S  R
Sbjct: 56  VHRPNSPHLTIYEPQLTWYLSSLHR 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,570,170
Number of Sequences: 5004
Number of extensions: 45485
Number of successful extensions: 170
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)