Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10g16r
(753 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0252 - 6315834-6315959,6316074-6317018 31 0.98
08_02_0527 + 18212938-18213257,18213352-18213991 30 2.3
12_02_0895 + 24094809-24094886,24097197-24097402,24097493-24097919 29 3.0
05_07_0309 - 29126562-29126604,29126752-29126932,29127277-291274... 29 3.0
03_02_0534 - 9267297-9267734,9268376-9268649,9268782-9268889,926... 29 3.0
10_01_0131 - 1541964-1542161,1542235-1542390,1543046-1543923,154... 29 5.2
07_03_0456 - 18382373-18382582,18382785-18383231 28 6.9
01_06_0569 + 30313337-30313650,30314271-30314353,30314763-303148... 28 6.9
11_05_0087 + 18970741-18972702 28 9.2
03_01_0372 + 2895807-2895883,2896557-2896647,2896741-2896839,289... 28 9.2
>09_02_0252 - 6315834-6315959,6316074-6317018
Length = 356
Score = 31.1 bits (67), Expect = 0.98
Identities = 22/52 (42%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +3
Query: 408 HRSTLVANCARSLTARQGASRALTDDSRALSP-DSGAHRAGDTVSASSSTTG 560
HRST A + TAR+G R T A P S A A D S SS TG
Sbjct: 121 HRSTSGPAAAAASTARRGYPRMPTPARAASCPSSSSAAAADDAASCCSSDTG 172
>08_02_0527 + 18212938-18213257,18213352-18213991
Length = 319
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +3
Query: 384 SSTTVSNKHRSTLVANCARSLTARQGASRALTDDSRALSPDSGAHRAGDTVSAS 545
S+ H TL+ + + SLT + LT ++RA +P + +VSAS
Sbjct: 195 SAAAAKRPHAQTLLQSLSASLTVNTDTNTPLTPENRAPAPPLQQQQQQQSVSAS 248
>12_02_0895 + 24094809-24094886,24097197-24097402,24097493-24097919
Length = 236
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +3
Query: 357 IVPPVLNQFSSTTVSNKHRSTLVANCARSLTARQGASRALTDDSRALSPDS 509
I P L + ++ T + + T +A+C+ ++ AS +TDD P +
Sbjct: 134 IAPCKLQESTAETFNTADKHTFIAHCSEPAPTQEVASCRVTDDDELAGPST 184
>05_07_0309 -
29126562-29126604,29126752-29126932,29127277-29127442,
29127519-29127724,29127814-29128153
Length = 311
Score = 29.5 bits (63), Expect = 3.0
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Frame = +3
Query: 399 SNKHRSTL---VANC---ARSLTARQGASRALTDDSRALSPDSGAHRAGDTVSASSST 554
+NK RS+L V +C RSL + A+R + S +LS H++GD+ SS T
Sbjct: 172 NNKRRSSLFDMVQDCDSGGRSLASSDPATRCNNNISASLSLQVSHHKSGDSAWPSSET 229
>03_02_0534 -
9267297-9267734,9268376-9268649,9268782-9268889,
9269476-9269567,9269652-9269711,9269812-9269994
Length = 384
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = +3
Query: 450 ARQGASRALTDDSRALSPDSGAHRAGDTVSASSSTTGRLCHFCF 581
AR + AL SR+ D GAH A + A+++ G +C CF
Sbjct: 214 ARSASPLALPSPSRS---DDGAHDAAISEEAAAAGGGEVCSICF 254
>10_01_0131 -
1541964-1542161,1542235-1542390,1543046-1543923,
1544060-1544135,1544162-1544191
Length = 445
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 15 VDYYWLLYRYPLSNSQNSSSTEAALLVSH 101
+D +WL Y+ N+ +S EA L +SH
Sbjct: 147 LDKFWLRYQVSDGNNNEKASAEAGLWISH 175
>07_03_0456 - 18382373-18382582,18382785-18383231
Length = 218
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -2
Query: 242 PGLRGRSTSPR-HAGEEAGAGKRLSGQPG 159
PG RGRS+ PR H G +G ++ G+ G
Sbjct: 189 PGCRGRSSLPRSHFGLRSGEATKVKGELG 217
>01_06_0569 +
30313337-30313650,30314271-30314353,30314763-30314876,
30315876-30315938,30316289-30316380,30316464-30316544,
30316629-30316727,30316795-30316933,30317017-30317165
Length = 377
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 245 EPGLRGRSTSPRHAGEEAGAGKRLSGQPG 159
E G RG T+PR + + G++ SG+PG
Sbjct: 2 EGGRRGDRTTPRPSPSDIDLGEQASGKPG 30
>11_05_0087 + 18970741-18972702
Length = 653
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 176 LSGQPGHYLDHRDGSTTDTEPENGPVRH*QRSFCAG 69
L G+ GH+ +HR G+ + EP P H +S AG
Sbjct: 63 LHGRHGHHREHRRGA-DELEPAGSPRHHRGQSVRAG 97
>03_01_0372 +
2895807-2895883,2896557-2896647,2896741-2896839,
2897220-2897268,2897269-2897405,2898027-2898248,
2898335-2898488,2898574-2898723,2898890-2898978,
2899632-2899844,2900180-2900314,2900461-2900640,
2901004-2901111,2901215-2901340,2901421-2901550,
2901637-2901729,2902067-2902192,2902294-2902304
Length = 729
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/57 (21%), Positives = 29/57 (50%)
Frame = -3
Query: 715 GDEDMEEAGVFAEAPALLSRLLNAALDAISEHITLEFKASIRDYKKQKWHNLPVVEE 545
G++D E G+ A + +++ D+++ + S++D + N+P+VE+
Sbjct: 117 GNDDPSEGGIMVRALEHILSVMSLETDSVAISFLQLYLESVQDLLAPEKTNIPIVED 173
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,779,630
Number of Sequences: 37544
Number of extensions: 336848
Number of successful extensions: 1158
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1158
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -