Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10g16r
(753 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33927| Best HMM Match : RINT1_TIP1 (HMM E-Value=0.00017) 33 0.19
SB_59416| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_44005| Best HMM Match : CUE (HMM E-Value=0.38) 30 2.3
SB_47298| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_18084| Best HMM Match : DUF801 (HMM E-Value=0.37) 29 3.1
SB_17019| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_26127| Best HMM Match : Pkinase (HMM E-Value=5.3e-10) 29 4.1
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_43150| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_29783| Best HMM Match : PA14 (HMM E-Value=5e-05) 28 7.1
SB_24473| Best HMM Match : An_peroxidase (HMM E-Value=0) 28 7.1
SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1
SB_42640| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_23760| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_3502| Best HMM Match : zf-DBF (HMM E-Value=4.9) 28 9.4
>SB_33927| Best HMM Match : RINT1_TIP1 (HMM E-Value=0.00017)
Length = 396
Score = 33.5 bits (73), Expect = 0.19
Identities = 30/101 (29%), Positives = 45/101 (44%), Gaps = 6/101 (5%)
Frame = -3
Query: 394 VVLENWFNTGGTMQFTFDVKRNLVPTFAPPSKVASQMNQLPKLLESCKLLNQDYEDARRL 215
V+ E +N GG Q FD+K NL F ++ N ++ E C LLNQ A L
Sbjct: 293 VIQECRYNEGGAAQLQFDMK-NLFTLFGEYTQ--KPENYYKEVKECCILLNQMPGSAILL 349
Query: 214 RDML------ERKPELARDFLGNQGITSITGMEALQILNQR 110
+ L + + L G+ ++ +AL+ILN R
Sbjct: 350 IESLQAAHAHDESTNAPQATLNEMGVYKLSSHDALRILNLR 390
>SB_59416| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 277
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = -3
Query: 343 DVKRNLVPTFAPPSKVASQMNQLPKLLESCKLLNQDYEDARRLRDMLERKPELARD 176
D++ L+ +F+ P+K++ + QLPK L C+ + D R + KP AR+
Sbjct: 28 DIRGTLIKSFSSPAKLSDLVPQLPKQL--CRKKSSDTTRERSRASNSKLKPIAARE 81
>SB_44005| Best HMM Match : CUE (HMM E-Value=0.38)
Length = 761
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +3
Query: 312 ANVGTKFRFTSNVNCIVPPVLNQFSSTTVSNKHRSTLVANCARSLTARQGASRALTDDSR 491
A+ G T NV+ + + + FS++T S H+S + + + R+G S ++
Sbjct: 46 ADTGRDLEITKNVSSTINRIFDGFSTSTYSTSHQSDCLPIAKFADSQRKGTSTTSIKHNK 105
Query: 492 ALS 500
LS
Sbjct: 106 DLS 108
>SB_47298| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 397
Score = 29.9 bits (64), Expect = 2.3
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -3
Query: 304 SKVASQMNQLPKLLESCKLLNQDYEDAR-RLRDMLERKPELARDFLGNQGITSITGM 137
SK A+Q+ Q P+LL KLL Q ++ R+ + E + EL G + +T M
Sbjct: 242 SKSAAQLAQNPELLAELKLLRQRKDELELRMSALQESRRELMVQLEGLMNLLKVTQM 298
>SB_18084| Best HMM Match : DUF801 (HMM E-Value=0.37)
Length = 599
Score = 29.5 bits (63), Expect = 3.1
Identities = 25/91 (27%), Positives = 37/91 (40%)
Frame = +3
Query: 384 SSTTVSNKHRSTLVANCARSLTARQGASRALTDDSRALSPDSGAHRAGDTVSASSSTTGR 563
S T N R L+ N S S + ALS S A +++S+S +
Sbjct: 296 SCETPGNHVRPALIGNSGLSKAGPSNCSCDMNASPSALSASSLPASASSAIASSASASSA 355
Query: 564 LCHFCFL*SLILALNSNVMCSEIASKAALSN 656
SL + +SN+ S+IAS A S+
Sbjct: 356 SMSSAS--SLSASASSNIASSDIASSANASS 384
>SB_17019| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = -2
Query: 245 EPGLRGRSTSPRHAGEEAGAGKRLSGQPGHYLDHRDGSTTDTEPENGP 102
EP +R R + AG+RL G+ H++ H++ + + + GP
Sbjct: 36 EPEVRARPPAVLRNSTAEPAGQRLRGRTSHFVTHQNTARVRCDGQIGP 83
>SB_26127| Best HMM Match : Pkinase (HMM E-Value=5.3e-10)
Length = 460
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +3
Query: 315 NVGTKFRFTSNVNCIVPPVLNQFSSTTVSNKHRSTLVANCARSLTA 452
N+G K R T+NVN P + N S V+NK + N R + A
Sbjct: 144 NLGAKSRLTANVNPFTPELSN---SLNVNNKRTRKVRQNALREVYA 186
>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 28.3 bits (60), Expect = 7.1
Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = -2
Query: 302 QSGLANEPIAQVARVL*TPEPGLRGRSTSPRHAGEEAGAGKR----LSGQPG 159
Q GL P A+ L EPG G++ SP GE AGK L G PG
Sbjct: 1146 QRGLTGNPGLPGAQGL-KGEPGRDGQNGSPGRKGEPGPAGKNGINGLDGPPG 1196
>SB_43150| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 616
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 48 LSNSQNSSSTEAALLVSHRSVLWFSICSASIPVIEVMPWLP 170
+ Q SS+ + A+L +W +IC++SI +I P P
Sbjct: 45 VEKEQQSSAMDPAVLQGLNHHIWVNICASSIALICETPLFP 85
>SB_29783| Best HMM Match : PA14 (HMM E-Value=5e-05)
Length = 1395
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 48 LSNSQNSSSTEAALLVSHRSVLWFSICSASIPVIEVMPWLP 170
+ Q SS+ + A+L +W +IC++SI +I P P
Sbjct: 45 VEKEQQSSAMDPAVLQGLNHHIWVNICASSIALICETPLFP 85
>SB_24473| Best HMM Match : An_peroxidase (HMM E-Value=0)
Length = 647
Score = 28.3 bits (60), Expect = 7.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 289 QMNQLPKLLESCKLLNQDYEDARRLRDM 206
QMNQ+ +++ + EDAR LRD+
Sbjct: 301 QMNQITAFIDASNIYGSSDEDARNLRDL 328
>SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4085
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +2
Query: 191 RLPLQHVAETSSVLVVLVQEFTGLEQLGQLVH 286
R P+ + + S++LVVL QE +++L Q++H
Sbjct: 3766 RQPVSNASTQSTLLVVLDQELNRIDRLLQVIH 3797
>SB_42640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 64
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = -2
Query: 284 EPIAQVARVL*TPEPGLRGRSTSPRHAGEEAGAGKRLSGQPGHYL 150
E +A R+L T P RST P H G EA +R P Y+
Sbjct: 19 EGVADGNRLLETDTPVAMYRSTLPTHNGGEAHVRRRTRCVPPSYI 63
>SB_23760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 632
Score = 27.9 bits (59), Expect = 9.4
Identities = 22/96 (22%), Positives = 47/96 (48%)
Frame = +3
Query: 369 VLNQFSSTTVSNKHRSTLVANCARSLTARQGASRALTDDSRALSPDSGAHRAGDTVSASS 548
+ + S+++ S S+L A+ + ++ + AS A ++ S + ++ A ++S+
Sbjct: 40 IASSASASSASMSSSSSLSASASSNIASSDIASSANASSAKTSSASASSNIASSASASSA 99
Query: 549 STTGRLCHFCFL*SLILALNSNVMCSEIASKAALSN 656
S + SL + +SN+ S+IAS A S+
Sbjct: 100 SMSSAS-------SLSASASSNIASSDIASSANASS 128
>SB_3502| Best HMM Match : zf-DBF (HMM E-Value=4.9)
Length = 476
Score = 27.9 bits (59), Expect = 9.4
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = -3
Query: 271 KLLESCKLLNQDYEDARRLRDMLERKPELARDFLG-NQGITSITGMEALQILNQRTDLCD 95
K L C ++N+D + +R+ + + PE DFLG Q G ++L +L +T++ +
Sbjct: 273 KDLVPCSVINEDDKLSRQRTNDAKTVPEGVNDFLGAYQYEEKNKGEDSLSVLKLQTEVAE 332
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,160,536
Number of Sequences: 59808
Number of extensions: 378549
Number of successful extensions: 1265
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1264
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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