Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10g16r
(753 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC068483-1|AAH68483.1| 792|Homo sapiens RAD50 interactor 1 prot... 74 6e-13
AC073073-1|AAQ96849.1| 416|Homo sapiens unknown protein. 74 6e-13
AK021847-1|BAB13910.1| 416|Homo sapiens protein ( Homo sapiens ... 73 8e-13
AF317622-1|AAG42101.1| 821|Homo sapiens RAD50-interacting prote... 73 8e-13
BC007120-1|AAH07120.2| 163|Homo sapiens RINT1 protein protein. 52 2e-06
AC073073-2|AAQ96850.1| 151|Homo sapiens unknown protein. 52 2e-06
X83543-1|CAA58534.1| 1616|Homo sapiens APXL protein. 33 1.5
AC002365-1|AAC32592.1| 1561|Homo sapiens APXL protein. 33 1.5
>BC068483-1|AAH68483.1| 792|Homo sapiens RAD50 interactor 1 protein.
Length = 792
Score = 73.7 bits (173), Expect = 6e-13
Identities = 61/220 (27%), Positives = 98/220 (44%), Gaps = 3/220 (1%)
Frame = -3
Query: 742 NLAVTXLLSGDEDMEEAGVFAEAPALLSRLLNAALDAISEHITLEFKASIRDYKKQKWHN 563
N ++ L G E+ VF + LL RL + L +H+ E K + + YKK++W +
Sbjct: 573 NNTLSKLQLGQLASMESSVFDDMINLLERLKHDMLTRQVDHVFREVKDAAKLYKKERWLS 632
Query: 562 LPVVEELA-LTVSPALCAPXXXXXXXXXXXXXXXAPCLAVRLRAQLATNVDRCLFETVVL 386
LP E A +++S + C L L +D +++ ++L
Sbjct: 633 LPSQSEQAVMSLSSSACPLLLTLRDHLLQLEQQLCFSLFKIFWQMLVEKLDVYIYQEIIL 692
Query: 385 ENWFNTGGTMQFTFDVKRNLVPTFAPPSKVASQMNQLPKLLESCKLLNQDYEDARRLRDM 206
N FN GG Q FD+ RNL P F+ K N + E+C +LN + A L+D+
Sbjct: 693 ANHFNEGGAAQLQFDMTRNLFPLFSHYCK--RPENYFKHIKEACIVLNLNVGSALLLKDV 750
Query: 205 LE-RKPEL-ARDFLGNQGITSITGMEALQILNQRTDLCDT 92
L+ +L A L GI + + +LN RT+ +T
Sbjct: 751 LQSASGQLPATAALNEVGIYKLAQQDVEILLNLRTNWPNT 790
>AC073073-1|AAQ96849.1| 416|Homo sapiens unknown protein.
Length = 416
Score = 73.7 bits (173), Expect = 6e-13
Identities = 61/220 (27%), Positives = 98/220 (44%), Gaps = 3/220 (1%)
Frame = -3
Query: 742 NLAVTXLLSGDEDMEEAGVFAEAPALLSRLLNAALDAISEHITLEFKASIRDYKKQKWHN 563
N ++ L G E+ VF + LL RL + L +H+ E K + + YKK++W +
Sbjct: 197 NNTLSKLQLGQLASMESSVFDDMINLLERLKHDMLTRQVDHVFREVKDAAKLYKKERWLS 256
Query: 562 LPVVEELA-LTVSPALCAPXXXXXXXXXXXXXXXAPCLAVRLRAQLATNVDRCLFETVVL 386
LP E A +++S + C L L +D +++ ++L
Sbjct: 257 LPSQSEQAVMSLSSSACPLLLTLRDHLLQLEQQLCFSLFKIFWQMLVEKLDVYIYQEIIL 316
Query: 385 ENWFNTGGTMQFTFDVKRNLVPTFAPPSKVASQMNQLPKLLESCKLLNQDYEDARRLRDM 206
N FN GG Q FD+ RNL P F+ K N + E+C +LN + A L+D+
Sbjct: 317 ANHFNEGGAAQLQFDMTRNLFPLFSHYCK--RPENYFKHIKEACIVLNLNVGSALLLKDV 374
Query: 205 LE-RKPEL-ARDFLGNQGITSITGMEALQILNQRTDLCDT 92
L+ +L A L GI + + +LN RT+ +T
Sbjct: 375 LQSASGQLPATAALNEVGIYKLAQQDVEILLNLRTNWPNT 414
>AK021847-1|BAB13910.1| 416|Homo sapiens protein ( Homo sapiens
cDNA FLJ11785 fis, clone HEMBA1006035. ).
Length = 416
Score = 73.3 bits (172), Expect = 8e-13
Identities = 60/220 (27%), Positives = 96/220 (43%), Gaps = 3/220 (1%)
Frame = -3
Query: 742 NLAVTXLLSGDEDMEEAGVFAEAPALLSRLLNAALDAISEHITLEFKASIRDYKKQKWHN 563
N ++ L G E+ VF + LL RL + L +H+ E K + + YKK++W +
Sbjct: 197 NNTLSKLQLGQLASMESSVFDDMINLLERLKHDMLTRQVDHVFREVKDAAKLYKKERWLS 256
Query: 562 LPVVEELA-LTVSPALCAPXXXXXXXXXXXXXXXAPCLAVRLRAQLATNVDRCLFETVVL 386
LP E A +++S + C L L +D +++ ++L
Sbjct: 257 LPSQSEQAVMSLSSSACPLLLTLRDHLLQLEQQLCFSLFKIFWQMLVEKLDVYIYQEIIL 316
Query: 385 ENWFNTGGTMQFTFDVKRNLVPTFAPPSKVASQMNQLPKLLESCKLLNQDYEDARRLRDM 206
N FN GG Q FD+ RNL P F+ K N + E+C +LN + A L+D+
Sbjct: 317 ANHFNEGGAAQLQFDMTRNLFPLFSHYCK--RPENYFKHIKEACIVLNLNVGSALLLKDV 374
Query: 205 LERK--PELARDFLGNQGITSITGMEALQILNQRTDLCDT 92
L+ A L GI + + +LN RT+ +T
Sbjct: 375 LQSASGQPPATAALNEVGIYKLAQQDVEILLNLRTNWPNT 414
>AF317622-1|AAG42101.1| 821|Homo sapiens RAD50-interacting protein 1
protein.
Length = 821
Score = 73.3 bits (172), Expect = 8e-13
Identities = 60/220 (27%), Positives = 99/220 (45%), Gaps = 3/220 (1%)
Frame = -3
Query: 742 NLAVTXLLSGDEDMEEAGVFAEAPALLSRLLNAALDAISEHITLEFKASIRDYKKQKWHN 563
N ++ L G E+ VF + LL RL + L +H+ E K + + YKK++W +
Sbjct: 602 NNTLSKLQLGQLASMESSVFDDMINLLERLKHDMLTRQVDHVFREVKDAAKLYKKERWLS 661
Query: 562 LPVVEELA-LTVSPALCAPXXXXXXXXXXXXXXXAPCLAVRLRAQLATNVDRCLFETVVL 386
LP E A +++S + C L L +D +++ ++L
Sbjct: 662 LPSQSEQAVMSLSSSACPLLLTLRDHLLQLEQQLCFSLFKIFWQMLVEKLDVYIYQEIIL 721
Query: 385 ENWFNTGGTMQFTFDVKRNLVPTFAPPSKVASQMNQLPKLLESCKLLNQDYEDARRLRDM 206
N FN GG Q FD+ RNL P F+ K N + E+C +LN + A L+D+
Sbjct: 722 ANHFNEGGAAQLQFDMTRNLFPLFSHYCK--RPENYFKHIKEACIVLNLNVGSALLLKDV 779
Query: 205 LE-RKPELARDFLGNQ-GITSITGMEALQILNQRTDLCDT 92
L+ +L+ N+ GI + + +LN RT+ +T
Sbjct: 780 LQSASGQLSTTAALNEVGIYKLAQQDVEILLNLRTNWPNT 819
>BC007120-1|AAH07120.2| 163|Homo sapiens RINT1 protein protein.
Length = 163
Score = 52.4 bits (120), Expect = 2e-06
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 2/115 (1%)
Frame = -3
Query: 430 LATNVDRCLFETVVLENWFNTGGTMQFTFDVKRNLVPTFAPPSKVASQMNQLPKLLESCK 251
L +D +++ ++L N FN GG Q FD+ RNL P F+ K N + E+C
Sbjct: 49 LVEKLDVYIYQEIILANHFNEGGAAQLQFDMTRNLFPLFSHYCK--RPENYFKHIKEACI 106
Query: 250 LLNQDYEDARRLRDMLE-RKPEL-ARDFLGNQGITSITGMEALQILNQRTDLCDT 92
+LN + A L+D+L+ +L A L GI + + +LN RT+ +T
Sbjct: 107 VLNLNVGSALLLKDVLQSASGQLPATAALNEVGIYKLAQQDVEILLNLRTNWPNT 161
>AC073073-2|AAQ96850.1| 151|Homo sapiens unknown protein.
Length = 151
Score = 52.4 bits (120), Expect = 2e-06
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 2/115 (1%)
Frame = -3
Query: 430 LATNVDRCLFETVVLENWFNTGGTMQFTFDVKRNLVPTFAPPSKVASQMNQLPKLLESCK 251
L +D +++ ++L N FN GG Q FD+ RNL P F+ K N + E+C
Sbjct: 37 LVEKLDVYIYQEIILANHFNEGGAAQLQFDMTRNLFPLFSHYCK--RPENYFKHIKEACI 94
Query: 250 LLNQDYEDARRLRDMLE-RKPEL-ARDFLGNQGITSITGMEALQILNQRTDLCDT 92
+LN + A L+D+L+ +L A L GI + + +LN RT+ +T
Sbjct: 95 VLNLNVGSALLLKDVLQSASGQLPATAALNEVGIYKLAQQDVEILLNLRTNWPNT 149
>X83543-1|CAA58534.1| 1616|Homo sapiens APXL protein.
Length = 1616
Score = 32.7 bits (71), Expect = 1.5
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = -3
Query: 268 LLESCKLLNQDYEDARRLRDMLERKPELARDFLGN 164
LLE ++L Q +EDA+ L++ L+R+ + D L N
Sbjct: 1531 LLEKQRVLIQQHEDAKELKENLDRRERIVFDILAN 1565
>AC002365-1|AAC32592.1| 1561|Homo sapiens APXL protein.
Length = 1561
Score = 32.7 bits (71), Expect = 1.5
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = -3
Query: 268 LLESCKLLNQDYEDARRLRDMLERKPELARDFLGN 164
LLE ++L Q +EDA+ L++ L+R+ + D L N
Sbjct: 1476 LLEKQRVLIQQHEDAKELKENLDRRERIVFDILAN 1510
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,321,598
Number of Sequences: 237096
Number of extensions: 1770963
Number of successful extensions: 9230
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9220
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9071127468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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