Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g16r
         (753 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-1023|AAF50736.2|  461|Drosophila melanogaster CG13287-P...    33   0.55 
AF289996-1|AAG02461.1| 1475|Drosophila melanogaster thyroid horm...    31   1.3  
AE014296-3591|AAF51757.2| 1475|Drosophila melanogaster CG7162-PA...    31   1.3  
AL021106-10|CAA15944.1| 2422|Drosophila melanogaster EG:63B12.3 ...    31   1.7  
AE014298-281|AAN09063.2| 2431|Drosophila melanogaster CG3848-PD,...    31   1.7  
AE014298-280|AAF45684.2| 2410|Drosophila melanogaster CG3848-PC,...    31   1.7  
BT004503-1|AAO42667.1| 2201|Drosophila melanogaster GH07949p pro...    30   3.9  
AE014298-2947|AAF49026.2| 2529|Drosophila melanogaster CG32529-P...    30   3.9  
AF145614-1|AAD38589.1|  537|Drosophila melanogaster BcDNA.GH0316...    29   6.8  
AE014297-4668|AAF57089.1|  537|Drosophila melanogaster CG31012-P...    29   6.8  
AE014297-4667|AAF57088.1|  545|Drosophila melanogaster CG31012-P...    29   6.8  
AE014297-4666|AAN14260.2|  635|Drosophila melanogaster CG31012-P...    29   6.8  
AE014297-4665|AAF57087.2|  882|Drosophila melanogaster CG31012-P...    29   6.8  
BT009935-1|AAQ22404.1|  880|Drosophila melanogaster SD08724p pro...    29   9.0  

>AE014296-1023|AAF50736.2|  461|Drosophila melanogaster CG13287-PA
           protein.
          Length = 461

 Score = 32.7 bits (71), Expect = 0.55
 Identities = 22/71 (30%), Positives = 31/71 (43%)
 Frame = -2

Query: 242 PGLRGRSTSPRHAGEEAGAGKRLSGQPGHYLDHRDGSTTDTEPENGPVRH*QRSFCAGTI 63
           PG R R T P+HA        + S Q     +H + + T T P  G     +R+F    +
Sbjct: 14  PGQR-RPTPPQHAELRISTSPQQSPQQNQTTNHNNNNETPTSPPGGKTTL-KRAFDVAFL 71

Query: 62  LRVRERIPVKQ 30
           +   ERI  KQ
Sbjct: 72  MMPDERIKQKQ 82


>AF289996-1|AAG02461.1| 1475|Drosophila melanogaster thyroid hormone
           receptor-associatedprotein TRAP220 protein.
          Length = 1475

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +3

Query: 411 RSTLVANCARSLTARQGASRALTDDSRALSPDSGAHRAGDTVSASSSTTG 560
           +S  +A+   + T+   A   L +  R   P SG+  +G TVS SSS++G
Sbjct: 589 KSRSLADAFAASTSAAAAIAGLINLKRETDPQSGSSASGTTVSGSSSSSG 638


>AE014296-3591|AAF51757.2| 1475|Drosophila melanogaster CG7162-PA
           protein.
          Length = 1475

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +3

Query: 411 RSTLVANCARSLTARQGASRALTDDSRALSPDSGAHRAGDTVSASSSTTG 560
           +S  +A+   + T+   A   L +  R   P SG+  +G TVS SSS++G
Sbjct: 589 KSRSLADAFAASTSAAAAIAGLINLKRETDPQSGSSASGTTVSGSSSSSG 638


>AL021106-10|CAA15944.1| 2422|Drosophila melanogaster EG:63B12.3
           protein.
          Length = 2422

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
 Frame = +3

Query: 354 CIVPPVLNQFSSTTVSNKH------RSTLVANCARSLTARQGASRALTDDSRALSPDSGA 515
           CI  P++      ++ NK+      ++T+     + +T    +S+A      AL  DS A
Sbjct: 592 CINSPMMGTRPIISIQNKNISLVLSKTTMAQQKPKMITTTTLSSQAALQMHHALIQDSSA 651

Query: 516 HRAGDTVSASSSTTG 560
            +AG + ++ S+T+G
Sbjct: 652 DKAGSSANSGSATSG 666


>AE014298-281|AAN09063.2| 2431|Drosophila melanogaster CG3848-PD,
           isoform D protein.
          Length = 2431

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
 Frame = +3

Query: 354 CIVPPVLNQFSSTTVSNKH------RSTLVANCARSLTARQGASRALTDDSRALSPDSGA 515
           CI  P++      ++ NK+      ++T+     + +T    +S+A      AL  DS A
Sbjct: 601 CINSPMMGTRPIISIQNKNISLVLSKTTMAQQKPKMITTTTLSSQAALQMHHALIQDSSA 660

Query: 516 HRAGDTVSASSSTTG 560
            +AG + ++ S+T+G
Sbjct: 661 DKAGSSANSGSATSG 675


>AE014298-280|AAF45684.2| 2410|Drosophila melanogaster CG3848-PC,
           isoform C protein.
          Length = 2410

 Score = 31.1 bits (67), Expect = 1.7
 Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
 Frame = +3

Query: 354 CIVPPVLNQFSSTTVSNKH------RSTLVANCARSLTARQGASRALTDDSRALSPDSGA 515
           CI  P++      ++ NK+      ++T+     + +T    +S+A      AL  DS A
Sbjct: 580 CINSPMMGTRPIISIQNKNISLVLSKTTMAQQKPKMITTTTLSSQAALQMHHALIQDSSA 639

Query: 516 HRAGDTVSASSSTTG 560
            +AG + ++ S+T+G
Sbjct: 640 DKAGSSANSGSATSG 654


>BT004503-1|AAO42667.1| 2201|Drosophila melanogaster GH07949p
           protein.
          Length = 2201

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = -3

Query: 340 VKRNLVPTFAPPSKVASQMNQLPKLLESCKLLNQDYEDARRLRDMLERKPE 188
           VK+  +P  APP KVAS      +  +S ++   D E+A+  ++  + KP+
Sbjct: 430 VKKKKLPKKAPPKKVASSETDAKRKKKSVQVEESDDEEAKE-KEKEKEKPK 479


>AE014298-2947|AAF49026.2| 2529|Drosophila melanogaster CG32529-PA,
           isoform A protein.
          Length = 2529

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = -3

Query: 340 VKRNLVPTFAPPSKVASQMNQLPKLLESCKLLNQDYEDARRLRDMLERKPE 188
           VK+  +P  APP KVAS      +  +S ++   D E+A+  ++  + KP+
Sbjct: 758 VKKKKLPKKAPPKKVASSETDAKRKKKSVQVEESDDEEAKE-KEKEKEKPK 807


>AF145614-1|AAD38589.1|  537|Drosophila melanogaster BcDNA.GH03163
           protein.
          Length = 537

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 21/83 (25%), Positives = 42/83 (50%)
 Frame = +3

Query: 291 EATLLGGANVGTKFRFTSNVNCIVPPVLNQFSSTTVSNKHRSTLVANCARSLTARQGASR 470
           +A     +++ TK + ++  + +        SS   S+ H +T  A  +RSL+A +  + 
Sbjct: 370 QAVSSNSSSITTKVQSSAVTSSMFVENSTTSSSVITSSSHTTTNDAIMSRSLSAAKVQTA 429

Query: 471 ALTDDSRALSPDSGAHRAGDTVS 539
           +  +++RA  P+S A R   +VS
Sbjct: 430 SSDEETRATRPNSLAIRNQRSVS 452


>AE014297-4668|AAF57089.1|  537|Drosophila melanogaster CG31012-PB,
           isoform B protein.
          Length = 537

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 21/83 (25%), Positives = 42/83 (50%)
 Frame = +3

Query: 291 EATLLGGANVGTKFRFTSNVNCIVPPVLNQFSSTTVSNKHRSTLVANCARSLTARQGASR 470
           +A     +++ TK + ++  + +        SS   S+ H +T  A  +RSL+A +  + 
Sbjct: 370 QAVSSNSSSITTKVQSSAVTSSMFVENSTTSSSVITSSSHTTTNDAIMSRSLSAAKVQTA 429

Query: 471 ALTDDSRALSPDSGAHRAGDTVS 539
           +  +++RA  P+S A R   +VS
Sbjct: 430 SSDEETRATRPNSLAIRNQRSVS 452


>AE014297-4667|AAF57088.1|  545|Drosophila melanogaster CG31012-PA,
           isoform A protein.
          Length = 545

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 21/83 (25%), Positives = 42/83 (50%)
 Frame = +3

Query: 291 EATLLGGANVGTKFRFTSNVNCIVPPVLNQFSSTTVSNKHRSTLVANCARSLTARQGASR 470
           +A     +++ TK + ++  + +        SS   S+ H +T  A  +RSL+A +  + 
Sbjct: 370 QAVSSNSSSITTKVQSSAVTSSMFVENSTTSSSVITSSSHTTTNDAIMSRSLSAAKVQTA 429

Query: 471 ALTDDSRALSPDSGAHRAGDTVS 539
           +  +++RA  P+S A R   +VS
Sbjct: 430 SSDEETRATRPNSLAIRNQRSVS 452


>AE014297-4666|AAN14260.2|  635|Drosophila melanogaster CG31012-PD,
           isoform D protein.
          Length = 635

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 21/83 (25%), Positives = 42/83 (50%)
 Frame = +3

Query: 291 EATLLGGANVGTKFRFTSNVNCIVPPVLNQFSSTTVSNKHRSTLVANCARSLTARQGASR 470
           +A     +++ TK + ++  + +        SS   S+ H +T  A  +RSL+A +  + 
Sbjct: 468 QAVSSNSSSITTKVQSSAVTSSMFVENSTTSSSVITSSSHTTTNDAIMSRSLSAAKVQTA 527

Query: 471 ALTDDSRALSPDSGAHRAGDTVS 539
           +  +++RA  P+S A R   +VS
Sbjct: 528 SSDEETRATRPNSLAIRNQRSVS 550


>AE014297-4665|AAF57087.2|  882|Drosophila melanogaster CG31012-PC,
           isoform C protein.
          Length = 882

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 21/83 (25%), Positives = 42/83 (50%)
 Frame = +3

Query: 291 EATLLGGANVGTKFRFTSNVNCIVPPVLNQFSSTTVSNKHRSTLVANCARSLTARQGASR 470
           +A     +++ TK + ++  + +        SS   S+ H +T  A  +RSL+A +  + 
Sbjct: 715 QAVSSNSSSITTKVQSSAVTSSMFVENSTTSSSVITSSSHTTTNDAIMSRSLSAAKVQTA 774

Query: 471 ALTDDSRALSPDSGAHRAGDTVS 539
           +  +++RA  P+S A R   +VS
Sbjct: 775 SSDEETRATRPNSLAIRNQRSVS 797


>BT009935-1|AAQ22404.1|  880|Drosophila melanogaster SD08724p
           protein.
          Length = 880

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 18/52 (34%), Positives = 30/52 (57%)
 Frame = +3

Query: 384 SSTTVSNKHRSTLVANCARSLTARQGASRALTDDSRALSPDSGAHRAGDTVS 539
           SS   S+ H +T  A  +RSL+A +  + +  +++RA  P+S A R   +VS
Sbjct: 744 SSVITSSSHTTTNDAIMSRSLSAAKVQTASSDEETRATRPNSLAIRNQRSVS 795


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,074,866
Number of Sequences: 53049
Number of extensions: 549117
Number of successful extensions: 2187
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2187
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3437745267
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)