Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10g16r
(753 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39745-4|AAA80446.1| 325|Caenorhabditis elegans Collagen protei... 29 2.7
AF000263-19|AAG00021.1| 321|Caenorhabditis elegans Collagen pro... 29 4.7
Z49886-3|CAA90052.1| 364|Caenorhabditis elegans Hypothetical pr... 28 6.2
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 28 6.2
AF078783-1|AAK82900.1| 382|Caenorhabditis elegans Hypothetical ... 28 6.2
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 28 6.2
AC024817-46|AAF59573.2| 289|Caenorhabditis elegans Hypothetical... 28 6.2
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr... 28 8.2
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr... 28 8.2
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 28 8.2
>U39745-4|AAA80446.1| 325|Caenorhabditis elegans Collagen protein
173 protein.
Length = 325
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -2
Query: 242 PGLRGRSTSPRHAGEEAGAGKR-LSGQPGHYLDHRDGSTTDTEPENGP 102
PGL+G P + GE+AG G++ + G G T E E GP
Sbjct: 192 PGLKGMPGIPGNQGEDAGPGRQGMPGPTGPPGPRGPPGETGDEGEGGP 239
>AF000263-19|AAG00021.1| 321|Caenorhabditis elegans Collagen
protein 56 protein.
Length = 321
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Frame = -2
Query: 296 GLANEPIAQVARVL*TP--EPGLRGRSTSPRHAGEEAGAGKR-LSGQPG 159
GL +P R + P PG+RGR P +G GKR + G+PG
Sbjct: 219 GLTGQP-GMPGRTVNAPPGSPGIRGRPGMPGASGRSGIIGKRGIHGEPG 266
>Z49886-3|CAA90052.1| 364|Caenorhabditis elegans Hypothetical
protein C06A1.3 protein.
Length = 364
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -3
Query: 247 LNQDYEDARRLRDMLERKPELARDFLGNQGITSITGMEALQIL 119
++ Y+D RL D++ R PE FLG+ G+E L +L
Sbjct: 94 IHAQYQDMNRLFDLIGRVPEEKLMFLGDYVDRGPQGIEVLILL 136
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 462 ASRALTDDSRALSPDSGAHRAGDTVSASSSTT 557
+SR +T+ S A + SGA G T ++SSS T
Sbjct: 4361 SSRNVTNSSSAAAAASGAQTTGATAASSSSAT 4392
>AF078783-1|AAK82900.1| 382|Caenorhabditis elegans Hypothetical
protein H10E21.2 protein.
Length = 382
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = +3
Query: 348 VNCIVPPVLNQFSSTTVSNKHRSTLVANCARSLTARQGASRALTDDSRALSPD 506
++C P++ F + + N H + + + + +T R GA + T ++ L PD
Sbjct: 253 ISCAAYPIILTFINKGIRNAHSTIMTSQRKKLMTIRAGAYQVAT-PTKILFPD 304
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 462 ASRALTDDSRALSPDSGAHRAGDTVSASSSTT 557
+SR +T+ S A + SGA G T ++SSS T
Sbjct: 4361 SSRNVTNSSSAAAAASGAQTTGATAASSSSAT 4392
>AC024817-46|AAF59573.2| 289|Caenorhabditis elegans Hypothetical
protein Y54G2A.24a protein.
Length = 289
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -3
Query: 247 LNQDYEDARRLRDMLERKPELARDFLGNQGITSITGMEALQIL 119
++ Y+D RL D++ R PE FLG+ G+E L +L
Sbjct: 93 IHAQYQDLNRLFDLIGRVPEEKLMFLGDYVDRGPQGIEVLILL 135
>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical protein
F25C8.3b protein.
Length = 3175
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +3
Query: 351 NCIVPPVLNQFSSTTVSNKHRSTLVANCARSLTARQGASRALTDDSRALSPDSGAHR 521
N I PP++ Q + +S +T A+ +T RQG S ++TD R S HR
Sbjct: 2803 NAISPPLVKQQAPPLISTSTLTTTFIRGAQDVTGRQG-SVSVTD--RGHSATVSTHR 2856
>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical protein
F25C8.3a protein.
Length = 3184
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +3
Query: 351 NCIVPPVLNQFSSTTVSNKHRSTLVANCARSLTARQGASRALTDDSRALSPDSGAHR 521
N I PP++ Q + +S +T A+ +T RQG S ++TD R S HR
Sbjct: 2812 NAISPPLVKQQAPPLISTSTLTTTFIRGAQDVTGRQG-SVSVTD--RGHSATVSTHR 2865
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 27.9 bits (59), Expect = 8.2
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Frame = +3
Query: 342 SNVNCIVPPVLNQFSSTTV-------SNKHRSTLVANCARSLTARQGASRALTDDSRALS 500
+ CI V N F ++T + ST V+ A S T QG+S + +
Sbjct: 870 TTTECICTTVSNTFGTSTTQGLTSSSAQSTASTGVSTVASSTTIPQGSSSSSPQSPTSAQ 929
Query: 501 PDSGAHRAGDTVSASSS 551
P + + TV+ SSS
Sbjct: 930 PAQSSSTSAATVTVSSS 946
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,521,779
Number of Sequences: 27780
Number of extensions: 267575
Number of successful extensions: 1005
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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