Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g16r
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.8  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    24   1.8  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   4.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   4.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   9.4  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 321 GTKFRFTSNVNCIVPPVLNQFSST 392
           G   R T  V  +VPP + QFS T
Sbjct: 568 GYSARGTLEVQVMVPPTIQQFSFT 591


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 15/50 (30%), Positives = 21/50 (42%)
 Frame = -1

Query: 174 FWATRALPRSQGWKHYRY*TRERTCATLTAQLLCWNYSESSREDTGKATN 25
           FW  RAL  S+G ++      E     L   +LC+       + TGK  N
Sbjct: 154 FWERRALQISEGVEYVGNIRWELAGTLLLVWILCYFCIWKGVKTTGKVVN 203


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 230 GRSTSPRHAGEEAGAGKRLSG 168
           GRS +PR+ G    A ++L G
Sbjct: 386 GRSVNPRYYGSLQAAARKLLG 406


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = -2

Query: 161 GHYLDHRDGSTTDTEPENGP 102
           GHY  H D    D  PE  P
Sbjct: 279 GHYGHHPDPGEVDLPPETQP 298


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
 Frame = -2

Query: 248  PEPGLRGRSTSPRHAGEEAGAGKRLSGQPGHYLDHRDGST--TDTEPENGPVRH*QR 84
            P P  RGR T P+ A  + G  +  +       +    +T    T P+ G  R+  R
Sbjct: 989  PSPFKRGRYTPPQPANAQQGQAQAQAKPQSQEANKPKPATGGKGTRPKRGKYRNYDR 1045


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 15  VDYYWLLYRYPLSNSQNSSSTEAALLVSHRSVLWFSIC 128
           +D Y  + R P+S  Q  S   A LLV+   +L F IC
Sbjct: 161 LDRYLAVTR-PVSYPQIMSPRRARLLVATVWILSFVIC 197


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,774
Number of Sequences: 438
Number of extensions: 3557
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)