Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10g16r
(753 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g50970.1 68416.m05581 dehydrin xero2 (XERO2) / low-temperatur... 30 1.4
At2g21490.1 68415.m02557 dehydrin family protein contains Pfam d... 29 3.3
At5g16240.1 68418.m01897 acyl-[acyl-carrier-protein] desaturase,... 29 4.4
At4g14760.1 68417.m02271 M protein repeat-containing protein con... 29 4.4
At4g24280.1 68417.m03486 heat shock protein 70, putative / HSP70... 28 5.8
At1g61270.1 68414.m06905 lysine and histidine specific transport... 28 5.8
At1g55540.1 68414.m06356 proline-rich family protein contains pr... 28 5.8
At4g29790.1 68417.m04242 expressed protein 28 7.7
At1g17040.1 68414.m02071 transcription factor-related contains P... 28 7.7
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 28 7.7
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 28 7.7
At1g03290.1 68414.m00307 expressed protein ESTs gb|H36966, gb|R6... 28 7.7
>At3g50970.1 68416.m05581 dehydrin xero2 (XERO2) /
low-temperature-induced protein LTI30 (LTI30) identical
to dehydrin Xero 2 (Low-temperature-induced protein
LTI30) [Arabidopsis thaliana] SWISS-PROT:P42758
Length = 193
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = -2
Query: 230 GRSTSPRHAGEEAGAGKRLSGQ-PGHYLDHRDGSTTDTEPENGPVRH*QRSFCAGTILRV 54
G +T+ H E+ G +++ Q PGH+ H+ G+TT + G V H +S T+ ++
Sbjct: 131 GTNTNVVHH-EKKGIAEKIKEQLPGHHGTHKTGTTT-SYGNTGVVHHENKS----TMDKI 184
Query: 53 RERIP 39
+E++P
Sbjct: 185 KEKLP 189
>At2g21490.1 68415.m02557 dehydrin family protein contains Pfam
domain, PF00257: Dehydrin
Length = 185
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Frame = -2
Query: 326 SPYVRSAEQSGLANEPIAQVARVL*TPEPGLRGRSTSPRHAGEEAGAGKRLSGQPGH--Y 153
+P + + S +A P + V P G +T+ G AG G +GQ H
Sbjct: 42 TPQHKESTTSDIAEHPTSTVGETHPAAAPAGAGAATAATATGVSAGTGATTTGQQHHGSL 101
Query: 152 LDH--RDGSTTDTEPEN 108
+H R GS++ + E+
Sbjct: 102 EEHLRRSGSSSSSSSED 118
>At5g16240.1 68418.m01897 acyl-[acyl-carrier-protein] desaturase,
putative / stearoyl-ACP desaturase, putative similar to
Acyl-[acyl-carrier protein] desaturase from Sesamum
indicum GI:575942, Cucumis sativus SP|P32061, Ricinus
communis SP|P22337; contains Pfam profile PF03405 Fatty
acid desaturase
Length = 394
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -3
Query: 388 LENWFNTGGTMQFTFDVKRNLVPT-FAPPSKVASQMNQLPKLLESCKLLNQDY 233
LE W N + + V+++ PT F P + +Q+ +L E CK L+ DY
Sbjct: 73 LEGWANDN-LLAYLKPVEKSWQPTDFLPEPESEGFYDQVKELRERCKELSDDY 124
>At4g14760.1 68417.m02271 M protein repeat-containing protein contains
Pfam profile: PF02370 M protein repeat
Length = 1676
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -3
Query: 283 NQLPKLLESCKLLNQDYEDARRLRDMLERKPELARDFLGNQ 161
N+ +L + + L +DYED+RR+R LE + D G Q
Sbjct: 1143 NENEELHKEVEELRKDYEDSRRMRANLEWQISELSDVAGRQ 1183
>At4g24280.1 68417.m03486 heat shock protein 70, putative / HSP70,
putative strong similarity to heat shock protein 70
[Arabidopsis thaliana] GI:6746592; similar to heat shock
70 protein - Spinacia oleracea,PID:g2654208
Length = 718
Score = 28.3 bits (60), Expect = 5.8
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = -2
Query: 287 NEPIAQVARVL*TPEPGLRGRSTSPRHAGEEAGAGKRLSGQPGHYLDHRDGSTTDTE 117
N+ + Q+ + L +PG G P GE A +G S + G D D TD++
Sbjct: 663 NQEVMQIGQSLYN-QPGAGGPGAGPSPGGEGASSGDSSSSKGGDGDDVIDADFTDSQ 718
>At1g61270.1 68414.m06905 lysine and histidine specific transporter,
putative similar to lysine and histidine specific
transporter GI:2576361 from [Arabidopsis thaliana];
contains Pfam profile PF01490: Transmembrane amino acid
transporter protein
Length = 451
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +2
Query: 152 GNALVAQKVSCQLRLPLQHVAETSSVLVVLVQEFTGLEQLGQL 280
G A +K+ + +PLQ + ETS+ +V +V L+++ QL
Sbjct: 106 GQAAFGKKLGLYIVVPLQLLVETSACIVYMVTGGESLKKIHQL 148
>At1g55540.1 68414.m06356 proline-rich family protein contains
proline rich extensin domain, INTERPRO:IPR002965
Length = 915
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -3
Query: 304 SKVASQMNQLPKLLESCKLLNQDYEDARRLRDMLER 197
S + + +NQ + +S + N D E ARR R+ L+R
Sbjct: 68 SSIPASINQQSRQRQSSAMKNSDPETARRRRESLDR 103
>At4g29790.1 68417.m04242 expressed protein
Length = 1211
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -1
Query: 159 ALPRSQGWKHYRY*TRERTCATLTAQLLCWNYSESSREDTGKATNSN 19
AL ++G + + R++T ++ C N E +R K TNSN
Sbjct: 1091 ALVNAKGERKSKTKPRQKTTPMFSSSSTCVNIVEQTRTSLSKTTNSN 1137
>At1g17040.1 68414.m02071 transcription factor-related contains Pfam
profile: PF00017 Src homology domain 2; similar to
transcription factor [Danio rerio] (GI:3687402)
Length = 641
Score = 27.9 bits (59), Expect = 7.7
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = -3
Query: 244 NQDYEDARRLRDMLERKPELAR 179
++ Y DA++L+DML +PEL+R
Sbjct: 612 SERYTDAKQLQDMLLAEPELSR 633
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -2
Query: 224 STSPRHAGEEAGAGKRLSGQPGHYLDHRDGSTTDTEPENGPV 99
ST P G A + K ++GQ Y G TTD +P N V
Sbjct: 223 STRPMRIGP-AASKKGVTGQRDSYQSSAAGVTTDNDPNNTTV 263
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -2
Query: 224 STSPRHAGEEAGAGKRLSGQPGHYLDHRDGSTTDTEPENGPV 99
ST P G A + K ++GQ Y G TTD +P N V
Sbjct: 223 STRPMRIGP-AASKKGVTGQRDSYQSSAAGVTTDNDPNNTTV 263
>At1g03290.1 68414.m00307 expressed protein ESTs gb|H36966,
gb|R65511, gb|T42324 and gb|T20569 come from this gene
Length = 571
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -3
Query: 298 VASQMNQLPKLLESCKLLNQDYEDARRLRDMLERKPELARDFLG 167
+A Q + K+++ KLL Q+ E+ +LRD L + ++ G
Sbjct: 430 LAEQEANMEKVVQESKLLQQEAEENSKLRDFLMDRGQIVDTLQG 473
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,787,628
Number of Sequences: 28952
Number of extensions: 249420
Number of successful extensions: 802
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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