Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g16f
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    33   0.035
SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1 |Schizosa...    31   0.11 
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    31   0.14 
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    29   0.74 
SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dl...    28   1.3  
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    27   1.7  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    27   2.3  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    26   5.2  
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz...    26   5.2  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    26   5.2  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    26   5.2  
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi...    25   6.9  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   9.1  

>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 33.1 bits (72), Expect = 0.035
 Identities = 37/164 (22%), Positives = 73/164 (44%), Gaps = 4/164 (2%)
 Frame = +3

Query: 15  IQNLKVISNELRKRVAVFLEQTEPLRAEMERKFHAINKLYEIIEYLRSFEKVDDLSRQMK 194
           + N+ ++ N + K +   +   EP +A+    F + +      E + + E  D L++  K
Sbjct: 185 LHNVHIVQN-ISKSIQAQINDYEPRKAQSNLSFVS-DVSSSTSETVYAHEPSDSLAKASK 242

Query: 195 QSSDDEQLVLLYGELKHMCQLYQKGHRGNYVKEYTHYWHNVLKDKLTQHFDEVMKL---L 365
           Q     Q+  +  +L+ + +L     R N + ++   W+    +   + F  VM L   L
Sbjct: 243 Q-----QIPTVQNDLRILIKLDITIGRLNLIDQFE--WNLFAPESSAEEFATVMCLDLGL 295

Query: 366 KWPFISGAEHSPPPK-EVMIKFTNLIRYLFLIEEPEDLNINAAV 494
              F +   HS   + ++ IK+ +LI YLF   E ED  + + +
Sbjct: 296 SGEFCTAVAHSIREQCQMYIKYLSLIGYLFDGSEIEDEEVRSYI 339


>SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 20/80 (25%), Positives = 40/80 (50%)
 Frame = +3

Query: 3   NSMQIQNLKVISNELRKRVAVFLEQTEPLRAEMERKFHAINKLYEIIEYLRSFEKVDDLS 182
           N + I N  +  +EL K++ +   +   L    E++F+ +NKL   I  L+ F  ++DL+
Sbjct: 23  NELHINNSGM--SELNKKLQLPNVELSTLSHTQEQEFNELNKLIRKINELQEFYLLEDLA 80

Query: 183 RQMKQSSDDEQLVLLYGELK 242
           + +  +  D     +  +LK
Sbjct: 81  KPVTNAGADADEDTIVKDLK 100


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 567 FAFHFMGSRQTARIDRPEWF 626
           F +HFM  +QT  + +PEWF
Sbjct: 213 FRYHFMSQKQTNVLSKPEWF 232


>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = -2

Query: 478 FKSSGSSIKNKYLMRFVNLIITSLGGGEC-SAPLIKGHFSNFITSSK 341
           F  + S I N +  R  N++ ++       SAP    H SNF  S K
Sbjct: 84  FNMNSSEISNTHWARDFNILTSNFASSSVTSAPTQSSHISNFTNSQK 130


>SPAC19G12.12 |dlp1||decaprenyl diphosphate synthase subunit 2 Dlp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 97  SARNGSVCSKNTATLFLNSLLITFKFCICIEL 2
           S +NGSV   N  T+ L S  +  K C+C  +
Sbjct: 187 SRQNGSVGLSNERTILLQSAFMPAKACLCASI 218


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/66 (21%), Positives = 34/66 (51%)
 Frame = +3

Query: 69  LEQTEPLRAEMERKFHAINKLYEIIEYLRSFEKVDDLSRQMKQSSDDEQLVLLYGELKHM 248
           L Q +  ++ +E +F  + + +    Y+++ EK +DL R       +++L+    + +H 
Sbjct: 127 LSQIKARKSVLESRFSRLEEAFRDF-YIKNLEKTEDLIRTDSHFVLNKELLSFRNDYEHR 185

Query: 249 CQLYQK 266
            + Y+K
Sbjct: 186 RKHYEK 191


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/18 (61%), Positives = 16/18 (88%)
 Frame = -2

Query: 178 KSSTFSKDLKYSIISYNL 125
           K ST SK+LK++I+SYN+
Sbjct: 326 KPSTTSKNLKFTIMSYNV 343


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = +3

Query: 135  EIIEYLRS--FEKVDDLSRQMKQSSDDEQLVLLYGELKHM-CQLYQKGHRGNYVKEYTHY 305
            E+ +++ S  F + +D  +Q  + +D+E  +L +  L+H+  QL Q     N + E +  
Sbjct: 1514 EVNQFMLSCFFCRWEDFLKQQHKLADEEASLLQFSRLEHLRKQLAQNTFNENILNESSAS 1573

Query: 306  WH 311
            +H
Sbjct: 1574 YH 1575


>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
           Chs2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 926

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = -3

Query: 603 ELSVWTP*NEMQISSLTALREHEQANMGLVLDQNLGQQQHLC 478
           +L  W+   ++QI+    L + + A+  + L   +   +HLC
Sbjct: 235 QLRTWSTGRDIQIAVCLTLSDEDLASFAISLSSIMNNLKHLC 276


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 7/27 (25%), Positives = 20/27 (74%)
 Frame = +3

Query: 288 KEYTHYWHNVLKDKLTQHFDEVMKLLK 368
           K+++H  H++++D+  +H++ VM  ++
Sbjct: 475 KKFSHITHSLIEDERKKHYEGVMNSIE 501


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +3

Query: 366 KWPFISGAEHSPPPKEVMIKFTNLIRYLFLIEEPEDLNINAAVAQD 503
           K PF S  E   PP  V+I   N+I    L    +  NI++ VA+D
Sbjct: 348 KAPFASLLEGVIPPINVLIVEDNIINQKILETFMKKRNISSEVAKD 393


>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
           Gap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 766

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
 Frame = +3

Query: 81  EPLRAEMERKFHAINKLYEIIEYLRSFEKVDDLSRQMKQSSDDEQLVL-LYG 233
           EPL +E+E++F  ++ LYE I   R  + + D+ R +   ++  Q  L +YG
Sbjct: 582 EPLTSEVEKEFIDLDALYERIRAER--DALQDVHRAICDHNEYLQTQLQIYG 631


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/47 (19%), Positives = 26/47 (55%)
 Frame = +3

Query: 72  EQTEPLRAEMERKFHAINKLYEIIEYLRSFEKVDDLSRQMKQSSDDE 212
           + T+P  A  +      N + +++++    E +DDL+ ++ ++ ++E
Sbjct: 426 DMTDPTIAGFDHPLDDDNDVNDLLDFETEREDIDDLTDEVMETEENE 472


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,543,544
Number of Sequences: 5004
Number of extensions: 50984
Number of successful extensions: 172
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)