BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= fner10g16f (635 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 11_04_0129 - 13763651-13763911,13763978-13764327,13764448-137646... 38 0.007 06_01_0584 - 4178391-4178732,4178854-4178915,4180361-4180481,418... 32 0.44 06_01_0588 - 4224348-4224516,4224674-4224767,4224872-4225490,422... 29 2.3 02_05_1059 + 33815979-33816235,33816467-33816732,33817149-338171... 29 2.3 12_02_1286 - 27555143-27555191,27555290-27555511,27555911-275561... 29 3.1 01_01_0176 + 1507592-1507678,1507803-1507931,1508076-1508252,150... 29 4.1 07_01_0130 - 963856-965454 28 5.4 02_05_0478 - 29343548-29343682,29343831-29343833,29344261-293444... 28 5.4 02_01_0591 + 4384246-4384434,4384531-4384658,4384741-4384778,438... 28 5.4 01_01_0161 - 1385408-1385566,1385815-1385943,1386164-1386322,138... 28 5.4 03_06_0523 + 34499533-34499705,34499808-34499917,34500037-345002... 28 7.1 02_02_0157 - 7280335-7280541,7280656-7280762,7280918-7281097,728... 28 7.1 09_06_0001 + 20114108-20115686,20115813-20115928,20116416-201173... 27 9.4 >11_04_0129 - 13763651-13763911,13763978-13764327,13764448-13764606, 13764677-13765160 Length = 417 Score = 37.9 bits (84), Expect = 0.007 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Frame = +3 Query: 123 NKLYEIIEYLRSFEKVDDLSRQMKQSSDDEQLVLLYGELKHM-CQLYQKGHRGNY 284 ++L+ ++E SF +D+ Q S E+ + YG++++ C L KG +GNY Sbjct: 261 DELFSVLELYESFSCYNDIVEQNMPSHFSEKFLQKYGQIRYWDCALLTKGDKGNY 315 >06_01_0584 - 4178391-4178732,4178854-4178915,4180361-4180481, 4180592-4180732,4180830-4180959,4182306-4182436, 4182528-4182601,4182680-4182741,4183135-4183209, 4184658-4184760,4184835-4184991,4185549-4185743, 4186204-4186282,4186697-4186806,4187249-4187374, 4187475-4187541,4187622-4187791,4187880-4188018, 4188361-4188522,4188672-4188772,4188852-4188994, 4189438-4189537,4190364-4190414,4191062-4191169, 4191279-4191494,4191585-4191721,4191820-4191915, 4192017-4192234,4192764-4192925,4193006-4193163, 4194221-4194379 Length = 1364 Score = 31.9 bits (69), Expect = 0.44 Identities = 32/141 (22%), Positives = 67/141 (47%), Gaps = 7/141 (4%) Frame = +3 Query: 120 INKLYEIIEYLR--SFEKVDDLSRQMKQSSDDEQLVLLYGELK-HMCQLYQKGHRGNYVK 290 +++L+ ++ +L SF + DL + K + D+Q+ L+G LK H+ + ++K + +K Sbjct: 421 LDELFMLMHFLEGDSFGSIADLQEEFKDINQDKQVEKLHGMLKPHLLRRFKK----DVMK 476 Query: 291 EYTHYWHNVLKDKLTQHFDEVMKLL---KWPFISGAEHSPPPK-EVMIKFTNLIRYLFLI 458 E +L+ +LT E K + + ++ V+++ L + F+ Sbjct: 477 ELPPKKELILRVELTSKQKEYYKAILTKNYEVLTRRSGGHVSLINVVMELRKLCCHAFMT 536 Query: 459 EEPEDLNINAAVAQDFGQELN 521 +EPE+ N+ A F +N Sbjct: 537 DEPEE-PANSEEALRFSDVIN 556 Score = 29.9 bits (64), Expect = 1.8 Identities = 15/52 (28%), Positives = 28/52 (53%) Frame = +3 Query: 108 KFHAINKLYEIIEYLRSFEKVDDLSRQMKQSSDDEQLVLLYGELKHMCQLYQ 263 K +AI ++ +I L S K++ L + M + + VL+Y + +HM L + Sbjct: 593 KHNAIFEVVDIWRLLESSGKMELLDKMMVKLKEQGHRVLIYSQFQHMLDLLE 644 >06_01_0588 - 4224348-4224516,4224674-4224767,4224872-4225490, 4225609-4225734,4225819-4226487,4226728-4226853, 4226940-4227266,4227366-4227439,4228469-4228583, 4228871-4229164 Length = 870 Score = 29.5 bits (63), Expect = 2.3 Identities = 19/68 (27%), Positives = 31/68 (45%) Frame = +3 Query: 135 EIIEYLRSFEKVDDLSRQMKQSSDDEQLVLLYGELKHMCQLYQKGHRGNYVKEYTHYWHN 314 E I+ F+ + DL + S + LYG L H Q GH +V+ + WHN Sbjct: 248 EKIDKKVDFQPMLDLKPFISDSKGADFKYSLYGVLVHAGWNTQSGHYYCFVRTSSGMWHN 307 Query: 315 VLKDKLTQ 338 + +++ Q Sbjct: 308 LDDNQVRQ 315 >02_05_1059 + 33815979-33816235,33816467-33816732,33817149-33817192, 33817363-33817539,33817638-33817964,33818067-33818192, 33818518-33818622,33818815-33820125,33820221-33820382, 33820416-33820517,33820549-33821272,33821358-33821451, 33821824-33821986 Length = 1285 Score = 29.5 bits (63), Expect = 2.3 Identities = 21/87 (24%), Positives = 39/87 (44%) Frame = +3 Query: 105 RKFHAINKLYEIIEYLRSFEKVDDLSRQMKQSSDDEQLVLLYGELKHMCQLYQKGHRGNY 284 ++F N ++I + ++ F+ +L + E LYG L H Q GH + Sbjct: 326 KRFSPFNPRHKIDKKVQ-FQPTLNLKPYVSNPEGMEFKYSLYGVLVHAGWNTQSGHYYCF 384 Query: 285 VKEYTHYWHNVLKDKLTQHFDEVMKLL 365 V+ + WHN+ +K T +++ L Sbjct: 385 VRTSSGIWHNLDDNKRTCFVRHLLRAL 411 >12_02_1286 - 27555143-27555191,27555290-27555511,27555911-27556162, 27556683-27557062,27557202-27557311,27557864-27558033, 27558236-27558444,27558528-27558617,27559125-27559264, 27559356-27559463,27559626-27559716,27560736-27560852, 27561497-27561767,27561892-27562193,27562400-27562469, 27563464-27563702,27564613-27564846,27564943-27565179, 27565276-27565734 Length = 1249 Score = 29.1 bits (62), Expect = 3.1 Identities = 18/68 (26%), Positives = 37/68 (54%) Frame = +3 Query: 18 QNLKVISNELRKRVAVFLEQTEPLRAEMERKFHAINKLYEIIEYLRSFEKVDDLSRQMKQ 197 +NL+ +LR R L Q LRA++ + H+I K + + +LR E+ + ++++ + Sbjct: 455 KNLEENMQQLRSRENEILSQERELRAKLNKILHSIPKHEDELAHLR--EEHNKIAKERQT 512 Query: 198 SSDDEQLV 221 S Q++ Sbjct: 513 SGVKYQML 520 >01_01_0176 + 1507592-1507678,1507803-1507931,1508076-1508252, 1508630-1508770,1509045-1509233,1509311-1509382, 1509483-1509537,1509987-1510015,1510182-1510396, 1510987-1511151,1511262-1511646 Length = 547 Score = 28.7 bits (61), Expect = 4.1 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 4/72 (5%) Frame = +3 Query: 138 IIEYLRSFEKVDDLSRQMKQSS----DDEQLVLLYGELKHMCQLYQKGHRGNYVKEYTHY 305 I E+L + + LSR K+ S +DE L+ L+ L + L G KE ++ Sbjct: 380 ISEHLPAGDPPSPLSRSRKRRSFSEEEDELLLKLHALLGNRWSLIAGRLPGRTDKEVMNH 439 Query: 306 WHNVLKDKLTQH 341 W++ L D +H Sbjct: 440 WNSKLMDSTIEH 451 >07_01_0130 - 963856-965454 Length = 532 Score = 28.3 bits (60), Expect = 5.4 Identities = 22/101 (21%), Positives = 48/101 (47%), Gaps = 5/101 (4%) Frame = +3 Query: 120 INKLYEIIEYLRSFEKVDDLSRQMKQ-----SSDDEQLVLLYGELKHMCQLYQKGHRGNY 284 I++ Y + L + EK+ L R + + D + +L +G L+H+ L Q +RG Y Sbjct: 32 IDRCYSKLPLLSNEEKIQRLERMLHRLAAAIEEADGRRILNHGMLRHINILRQDMYRGYY 91 Query: 285 VKEYTHYWHNVLKDKLTQHFDEVMKLLKWPFISGAEHSPPP 407 + + + ++ ++++ D+V L + A+ + P Sbjct: 92 ILDSFRFPEAHEEEIMSENNDKVSYSLALSKFNSAKRARIP 132 >02_05_0478 - 29343548-29343682,29343831-29343833,29344261-29344401, 29344496-29344638,29345004-29345161,29345261-29345342, 29345506-29345603,29345726-29345880,29346200-29346283, 29346541-29346681 Length = 379 Score = 28.3 bits (60), Expect = 5.4 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = +3 Query: 402 PPKEVMIKFTNLIRYLFLIEEPEDLNINAAVAQDFGQE 515 PP EV NL ++ ++ +PE + AA+A+D G E Sbjct: 72 PPPEVAKALGNL-KFPYVYPDPESRQLRAALAEDSGLE 108 >02_01_0591 + 4384246-4384434,4384531-4384658,4384741-4384778, 4385248-4385358,4386266-4386345,4386910-4386946, 4387230-4387271,4387555-4387595,4387645-4387746 Length = 255 Score = 28.3 bits (60), Expect = 5.4 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%) Frame = +3 Query: 237 LKHMCQLYQKGHRGNYVKE-YTHYWHN-VLKDKLTQHFDEVMKLLK 368 L HMC L G R ++E + Y N L+ K+ + FD+V +L+ Sbjct: 143 LDHMCSLLGGGPRAEEIRELWMEYEQNATLEAKVVKDFDKVEMILQ 188 >01_01_0161 - 1385408-1385566,1385815-1385943,1386164-1386322, 1387228-1387571,1387641-1387905,1387998-1388075, 1388207-1388260,1389341-1389361,1389453-1389578, 1389696-1389863,1389923-1390313,1390629-1390710, 1391175-1391536,1391806-1392630,1392956-1393476 Length = 1227 Score = 28.3 bits (60), Expect = 5.4 Identities = 23/75 (30%), Positives = 42/75 (56%) Frame = +3 Query: 123 NKLYEIIEYLRSFEKVDDLSRQMKQSSDDEQLVLLYGELKHMCQLYQKGHRGNYVKEYTH 302 +KL+ ++ L S ++ D+ SR+ Q+ DE VLL G L H + G+ +++++H Sbjct: 311 SKLWNKLDELTS-KQTDEQSRR-PQAEGDEPPVLL-GAL-HDDPPTMRRRSGSSIRKFSH 366 Query: 303 YWHNVLKDKLTQHFD 347 + N K+K + FD Sbjct: 367 WIENEPKEKWSLLFD 381 >03_06_0523 + 34499533-34499705,34499808-34499917,34500037-34500224, 34500984-34501451 Length = 312 Score = 27.9 bits (59), Expect = 7.1 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%) Frame = +3 Query: 165 KVDDLSRQMKQSSDDEQLVLLYGELKHMCQLYQKG--HRGNYVKEYTH 302 +VD +S+ K+ +DE+ + E + +C +QKG +RG + Y+H Sbjct: 108 RVDHVSKYKKKEEEDEEELQKKREARGVCYAFQKGECNRGASCR-YSH 154 >02_02_0157 - 7280335-7280541,7280656-7280762,7280918-7281097, 7281182-7281277,7281378-7281459,7281553-7283037, 7283376-7283450,7283521-7283598,7283708-7283791, 7283885-7283965,7284073-7284291,7284398-7284648, 7284748-7284796 Length = 997 Score = 27.9 bits (59), Expect = 7.1 Identities = 32/117 (27%), Positives = 60/117 (51%), Gaps = 1/117 (0%) Frame = +3 Query: 21 NLKVISNELRKRVAVFLEQTEPLRAEMERKFHAINKLY-EIIEYLRSFEKVDDLSRQMKQ 197 NLK + E +R+ E + R ++ K A+++L E E +R ++ DD+ R MK+ Sbjct: 348 NLKTVKAEETQRI----EDEDKYRI-IKEKDDALDRLVKEKEEMIRLLKEKDDVVRLMKE 402 Query: 198 SSDDEQLVLLYGELKHMCQLYQKGHRGNYVKEYTHYWHNVLKDKLTQHFDEVMKLLK 368 D L L GE++ ++ ++ +KE N + +LT+ +E+++LLK Sbjct: 403 KED--LLNLEKGEVEGTTKM-TDDNKDRLIKE-----KNDVVLRLTEEKEEMVRLLK 451 >09_06_0001 + 20114108-20115686,20115813-20115928,20116416-20117394, 20118820-20119082 Length = 978 Score = 27.5 bits (58), Expect = 9.4 Identities = 24/110 (21%), Positives = 55/110 (50%), Gaps = 2/110 (1%) Frame = +3 Query: 156 SFEKVDDLSRQMKQSSDDEQLVLLYGELKHMCQLYQKGHRGNYVKEYTHYWHNVLKDKLT 335 S ++V + K+ ++ L+ L+ + K M Q ++ + Y+ E +H KD+ Sbjct: 654 SIDEVFKRLNEQKKKNEKPDLISLFEDQKIMKQDLEEIRKRLYMLELKEGFHMEEKDEPI 713 Query: 336 QHFDEVMKLLKWPFISGAEHSPPPKEVMIKF--TNLIRYLFLIEEPEDLN 479 Q D+V++ ++ ++ ++ EVM +F + +++ LI+ D+N Sbjct: 714 QEDDQVVETIQ-KYMKQKWYT----EVMYRFIDRSYFQHITLIDSGADVN 758 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,169,927 Number of Sequences: 37544 Number of extensions: 279342 Number of successful extensions: 825 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 804 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 825 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1561213104 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -