Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g16f
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0129 - 13763651-13763911,13763978-13764327,13764448-137646...    38   0.007
06_01_0584 - 4178391-4178732,4178854-4178915,4180361-4180481,418...    32   0.44 
06_01_0588 - 4224348-4224516,4224674-4224767,4224872-4225490,422...    29   2.3  
02_05_1059 + 33815979-33816235,33816467-33816732,33817149-338171...    29   2.3  
12_02_1286 - 27555143-27555191,27555290-27555511,27555911-275561...    29   3.1  
01_01_0176 + 1507592-1507678,1507803-1507931,1508076-1508252,150...    29   4.1  
07_01_0130 - 963856-965454                                             28   5.4  
02_05_0478 - 29343548-29343682,29343831-29343833,29344261-293444...    28   5.4  
02_01_0591 + 4384246-4384434,4384531-4384658,4384741-4384778,438...    28   5.4  
01_01_0161 - 1385408-1385566,1385815-1385943,1386164-1386322,138...    28   5.4  
03_06_0523 + 34499533-34499705,34499808-34499917,34500037-345002...    28   7.1  
02_02_0157 - 7280335-7280541,7280656-7280762,7280918-7281097,728...    28   7.1  
09_06_0001 + 20114108-20115686,20115813-20115928,20116416-201173...    27   9.4  

>11_04_0129 -
           13763651-13763911,13763978-13764327,13764448-13764606,
           13764677-13765160
          Length = 417

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +3

Query: 123 NKLYEIIEYLRSFEKVDDLSRQMKQSSDDEQLVLLYGELKHM-CQLYQKGHRGNY 284
           ++L+ ++E   SF   +D+  Q   S   E+ +  YG++++  C L  KG +GNY
Sbjct: 261 DELFSVLELYESFSCYNDIVEQNMPSHFSEKFLQKYGQIRYWDCALLTKGDKGNY 315


>06_01_0584 -
           4178391-4178732,4178854-4178915,4180361-4180481,
           4180592-4180732,4180830-4180959,4182306-4182436,
           4182528-4182601,4182680-4182741,4183135-4183209,
           4184658-4184760,4184835-4184991,4185549-4185743,
           4186204-4186282,4186697-4186806,4187249-4187374,
           4187475-4187541,4187622-4187791,4187880-4188018,
           4188361-4188522,4188672-4188772,4188852-4188994,
           4189438-4189537,4190364-4190414,4191062-4191169,
           4191279-4191494,4191585-4191721,4191820-4191915,
           4192017-4192234,4192764-4192925,4193006-4193163,
           4194221-4194379
          Length = 1364

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 32/141 (22%), Positives = 67/141 (47%), Gaps = 7/141 (4%)
 Frame = +3

Query: 120 INKLYEIIEYLR--SFEKVDDLSRQMKQSSDDEQLVLLYGELK-HMCQLYQKGHRGNYVK 290
           +++L+ ++ +L   SF  + DL  + K  + D+Q+  L+G LK H+ + ++K    + +K
Sbjct: 421 LDELFMLMHFLEGDSFGSIADLQEEFKDINQDKQVEKLHGMLKPHLLRRFKK----DVMK 476

Query: 291 EYTHYWHNVLKDKLTQHFDEVMKLL---KWPFISGAEHSPPPK-EVMIKFTNLIRYLFLI 458
           E       +L+ +LT    E  K +    +  ++           V+++   L  + F+ 
Sbjct: 477 ELPPKKELILRVELTSKQKEYYKAILTKNYEVLTRRSGGHVSLINVVMELRKLCCHAFMT 536

Query: 459 EEPEDLNINAAVAQDFGQELN 521
           +EPE+   N+  A  F   +N
Sbjct: 537 DEPEE-PANSEEALRFSDVIN 556



 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +3

Query: 108 KFHAINKLYEIIEYLRSFEKVDDLSRQMKQSSDDEQLVLLYGELKHMCQLYQ 263
           K +AI ++ +I   L S  K++ L + M +  +    VL+Y + +HM  L +
Sbjct: 593 KHNAIFEVVDIWRLLESSGKMELLDKMMVKLKEQGHRVLIYSQFQHMLDLLE 644


>06_01_0588 -
           4224348-4224516,4224674-4224767,4224872-4225490,
           4225609-4225734,4225819-4226487,4226728-4226853,
           4226940-4227266,4227366-4227439,4228469-4228583,
           4228871-4229164
          Length = 870

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 19/68 (27%), Positives = 31/68 (45%)
 Frame = +3

Query: 135 EIIEYLRSFEKVDDLSRQMKQSSDDEQLVLLYGELKHMCQLYQKGHRGNYVKEYTHYWHN 314
           E I+    F+ + DL   +  S   +    LYG L H     Q GH   +V+  +  WHN
Sbjct: 248 EKIDKKVDFQPMLDLKPFISDSKGADFKYSLYGVLVHAGWNTQSGHYYCFVRTSSGMWHN 307

Query: 315 VLKDKLTQ 338
           +  +++ Q
Sbjct: 308 LDDNQVRQ 315


>02_05_1059 +
           33815979-33816235,33816467-33816732,33817149-33817192,
           33817363-33817539,33817638-33817964,33818067-33818192,
           33818518-33818622,33818815-33820125,33820221-33820382,
           33820416-33820517,33820549-33821272,33821358-33821451,
           33821824-33821986
          Length = 1285

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 21/87 (24%), Positives = 39/87 (44%)
 Frame = +3

Query: 105 RKFHAINKLYEIIEYLRSFEKVDDLSRQMKQSSDDEQLVLLYGELKHMCQLYQKGHRGNY 284
           ++F   N  ++I + ++ F+   +L   +      E    LYG L H     Q GH   +
Sbjct: 326 KRFSPFNPRHKIDKKVQ-FQPTLNLKPYVSNPEGMEFKYSLYGVLVHAGWNTQSGHYYCF 384

Query: 285 VKEYTHYWHNVLKDKLTQHFDEVMKLL 365
           V+  +  WHN+  +K T     +++ L
Sbjct: 385 VRTSSGIWHNLDDNKRTCFVRHLLRAL 411


>12_02_1286 -
           27555143-27555191,27555290-27555511,27555911-27556162,
           27556683-27557062,27557202-27557311,27557864-27558033,
           27558236-27558444,27558528-27558617,27559125-27559264,
           27559356-27559463,27559626-27559716,27560736-27560852,
           27561497-27561767,27561892-27562193,27562400-27562469,
           27563464-27563702,27564613-27564846,27564943-27565179,
           27565276-27565734
          Length = 1249

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 18/68 (26%), Positives = 37/68 (54%)
 Frame = +3

Query: 18  QNLKVISNELRKRVAVFLEQTEPLRAEMERKFHAINKLYEIIEYLRSFEKVDDLSRQMKQ 197
           +NL+    +LR R    L Q   LRA++ +  H+I K  + + +LR  E+ + ++++ + 
Sbjct: 455 KNLEENMQQLRSRENEILSQERELRAKLNKILHSIPKHEDELAHLR--EEHNKIAKERQT 512

Query: 198 SSDDEQLV 221
           S    Q++
Sbjct: 513 SGVKYQML 520


>01_01_0176 +
           1507592-1507678,1507803-1507931,1508076-1508252,
           1508630-1508770,1509045-1509233,1509311-1509382,
           1509483-1509537,1509987-1510015,1510182-1510396,
           1510987-1511151,1511262-1511646
          Length = 547

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
 Frame = +3

Query: 138 IIEYLRSFEKVDDLSRQMKQSS----DDEQLVLLYGELKHMCQLYQKGHRGNYVKEYTHY 305
           I E+L + +    LSR  K+ S    +DE L+ L+  L +   L      G   KE  ++
Sbjct: 380 ISEHLPAGDPPSPLSRSRKRRSFSEEEDELLLKLHALLGNRWSLIAGRLPGRTDKEVMNH 439

Query: 306 WHNVLKDKLTQH 341
           W++ L D   +H
Sbjct: 440 WNSKLMDSTIEH 451


>07_01_0130 - 963856-965454
          Length = 532

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 22/101 (21%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
 Frame = +3

Query: 120 INKLYEIIEYLRSFEKVDDLSRQMKQ-----SSDDEQLVLLYGELKHMCQLYQKGHRGNY 284
           I++ Y  +  L + EK+  L R + +        D + +L +G L+H+  L Q  +RG Y
Sbjct: 32  IDRCYSKLPLLSNEEKIQRLERMLHRLAAAIEEADGRRILNHGMLRHINILRQDMYRGYY 91

Query: 285 VKEYTHYWHNVLKDKLTQHFDEVMKLLKWPFISGAEHSPPP 407
           + +   +     ++ ++++ D+V   L     + A+ +  P
Sbjct: 92  ILDSFRFPEAHEEEIMSENNDKVSYSLALSKFNSAKRARIP 132


>02_05_0478 -
           29343548-29343682,29343831-29343833,29344261-29344401,
           29344496-29344638,29345004-29345161,29345261-29345342,
           29345506-29345603,29345726-29345880,29346200-29346283,
           29346541-29346681
          Length = 379

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 402 PPKEVMIKFTNLIRYLFLIEEPEDLNINAAVAQDFGQE 515
           PP EV     NL ++ ++  +PE   + AA+A+D G E
Sbjct: 72  PPPEVAKALGNL-KFPYVYPDPESRQLRAALAEDSGLE 108


>02_01_0591 +
           4384246-4384434,4384531-4384658,4384741-4384778,
           4385248-4385358,4386266-4386345,4386910-4386946,
           4387230-4387271,4387555-4387595,4387645-4387746
          Length = 255

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +3

Query: 237 LKHMCQLYQKGHRGNYVKE-YTHYWHN-VLKDKLTQHFDEVMKLLK 368
           L HMC L   G R   ++E +  Y  N  L+ K+ + FD+V  +L+
Sbjct: 143 LDHMCSLLGGGPRAEEIRELWMEYEQNATLEAKVVKDFDKVEMILQ 188


>01_01_0161 -
           1385408-1385566,1385815-1385943,1386164-1386322,
           1387228-1387571,1387641-1387905,1387998-1388075,
           1388207-1388260,1389341-1389361,1389453-1389578,
           1389696-1389863,1389923-1390313,1390629-1390710,
           1391175-1391536,1391806-1392630,1392956-1393476
          Length = 1227

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 23/75 (30%), Positives = 42/75 (56%)
 Frame = +3

Query: 123 NKLYEIIEYLRSFEKVDDLSRQMKQSSDDEQLVLLYGELKHMCQLYQKGHRGNYVKEYTH 302
           +KL+  ++ L S ++ D+ SR+  Q+  DE  VLL G L H      +   G+ +++++H
Sbjct: 311 SKLWNKLDELTS-KQTDEQSRR-PQAEGDEPPVLL-GAL-HDDPPTMRRRSGSSIRKFSH 366

Query: 303 YWHNVLKDKLTQHFD 347
           +  N  K+K +  FD
Sbjct: 367 WIENEPKEKWSLLFD 381


>03_06_0523 +
           34499533-34499705,34499808-34499917,34500037-34500224,
           34500984-34501451
          Length = 312

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +3

Query: 165 KVDDLSRQMKQSSDDEQLVLLYGELKHMCQLYQKG--HRGNYVKEYTH 302
           +VD +S+  K+  +DE+ +    E + +C  +QKG  +RG   + Y+H
Sbjct: 108 RVDHVSKYKKKEEEDEEELQKKREARGVCYAFQKGECNRGASCR-YSH 154


>02_02_0157 -
           7280335-7280541,7280656-7280762,7280918-7281097,
           7281182-7281277,7281378-7281459,7281553-7283037,
           7283376-7283450,7283521-7283598,7283708-7283791,
           7283885-7283965,7284073-7284291,7284398-7284648,
           7284748-7284796
          Length = 997

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 32/117 (27%), Positives = 60/117 (51%), Gaps = 1/117 (0%)
 Frame = +3

Query: 21  NLKVISNELRKRVAVFLEQTEPLRAEMERKFHAINKLY-EIIEYLRSFEKVDDLSRQMKQ 197
           NLK +  E  +R+    E  +  R  ++ K  A+++L  E  E +R  ++ DD+ R MK+
Sbjct: 348 NLKTVKAEETQRI----EDEDKYRI-IKEKDDALDRLVKEKEEMIRLLKEKDDVVRLMKE 402

Query: 198 SSDDEQLVLLYGELKHMCQLYQKGHRGNYVKEYTHYWHNVLKDKLTQHFDEVMKLLK 368
             D   L L  GE++   ++    ++   +KE      N +  +LT+  +E+++LLK
Sbjct: 403 KED--LLNLEKGEVEGTTKM-TDDNKDRLIKE-----KNDVVLRLTEEKEEMVRLLK 451


>09_06_0001 +
           20114108-20115686,20115813-20115928,20116416-20117394,
           20118820-20119082
          Length = 978

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 24/110 (21%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
 Frame = +3

Query: 156 SFEKVDDLSRQMKQSSDDEQLVLLYGELKHMCQLYQKGHRGNYVKEYTHYWHNVLKDKLT 335
           S ++V     + K+ ++   L+ L+ + K M Q  ++  +  Y+ E    +H   KD+  
Sbjct: 654 SIDEVFKRLNEQKKKNEKPDLISLFEDQKIMKQDLEEIRKRLYMLELKEGFHMEEKDEPI 713

Query: 336 QHFDEVMKLLKWPFISGAEHSPPPKEVMIKF--TNLIRYLFLIEEPEDLN 479
           Q  D+V++ ++  ++    ++    EVM +F   +  +++ LI+   D+N
Sbjct: 714 QEDDQVVETIQ-KYMKQKWYT----EVMYRFIDRSYFQHITLIDSGADVN 758


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,169,927
Number of Sequences: 37544
Number of extensions: 279342
Number of successful extensions: 825
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)