Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g16f
         (635 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33926| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.012
SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066)               29   3.2  
SB_4107| Best HMM Match : M (HMM E-Value=8e-22)                        29   3.2  
SB_54514| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_31403| Best HMM Match : PAN (HMM E-Value=2.7e-18)                   29   4.2  
SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)                   28   5.5  
SB_30353| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_13473| Best HMM Match : DUF1040 (HMM E-Value=1.5)                   28   7.3  
SB_41259| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_33926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 215

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 567 FAFHFMGSRQTARIDRPEWFLTQ 635
           F FHF G +QT  +++PEW+ TQ
Sbjct: 33  FKFHFYGKKQTNNLEKPEWYFTQ 55


>SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066)
          Length = 909

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 8/113 (7%)
 Frame = +3

Query: 18  QNLKVISNELRKRVAVFLEQTEPLRAEME--RKFHA-----INKLYEIIEYLRSFEKVDD 176
           Q L+   +E  K++     Q E +RAE+E  RK HA     + +  + +  L    ++ D
Sbjct: 251 QKLEEARHEFEKQIQEEGRQLEEMRAELERQRKLHAMEAQNVEEARQRVSELTRKHEIAD 310

Query: 177 LSRQMKQSSDDEQLVLLYGELKHMC-QLYQKGHRGNYVKEYTHYWHNVLKDKL 332
           L R  ++     ++     E+K    QL        YVK+      + LK+ +
Sbjct: 311 LERTSREKELKREIENRAQEIKEKAMQLETLREESEYVKQCAQKEVDTLKETI 363


>SB_4107| Best HMM Match : M (HMM E-Value=8e-22)
          Length = 2039

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/77 (23%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
 Frame = +3

Query: 6   SMQIQNLKVISNELRKRVAVFLEQTEPLRAEMERKFHAINKLYEIIEYLRS-----FEKV 170
           S + + L+  +NEL+++     +  E L+ E+ER    IN+  ++ E L +      E++
Sbjct: 540 SAEKEKLQAANNELQRQRDNLEDDKEDLQREVERMAKEINRSQQVTEQLENKQSSLKEEI 599

Query: 171 DDLSRQMKQSSDDEQLV 221
            +L  Q+ ++  D++++
Sbjct: 600 VNLKEQLSRALLDKEVL 616


>SB_54514| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 189

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 351 VMKLLKWPFISGAEHSPPPKEVMIKFTNLIRYLFL 455
           V+ LL W    G  +SPPP+ + + F   I  LF+
Sbjct: 143 VITLLDWACTHGGANSPPPQRLKVHFWFSIDVLFV 177


>SB_31403| Best HMM Match : PAN (HMM E-Value=2.7e-18)
          Length = 1051

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
 Frame = +3

Query: 12  QIQNLKVISNELRKRVAVFLEQTEPLRAEMERKFHAINKLYEIIEYLRSFEKVDDLSRQM 191
           +I  LK I   LRK +   LE+   L  + +   + +NK  + IE L +  K++ L+R++
Sbjct: 185 EIAQLKTIEPMLRKELDDCLEEKRHLVQQRDELENTVNKKQDEIEALNA--KLEILTREV 242

Query: 192 KQSSD--DEQLVLLYGELKHM 248
           ++     +E++  L  +L+ M
Sbjct: 243 EEERHRYEEEIAHLTEQLECM 263


>SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)
          Length = 3035

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 488  CCCPRFWSRTKPMFACSCSLKAVKEEI 568
            CC P F  R  P   CS SL  + +++
Sbjct: 2272 CCAPEFCKRDLPASGCSQSLSCLSKDV 2298


>SB_30353| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1553

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = +3

Query: 12  QIQNLKVISNELRKRVAVFLEQTEPLRAEMERKFHAI-NKLYEIIEYLRSFE-KVDDLSR 185
           Q+Q+L+   NEL ++  + ++  E L  E   +   + +KL      L+    KV D  R
Sbjct: 774 QLQSLQKYINELSEQNEILVQTVEELEREANERVALVESKLNRTNTSLKDTSIKVSDYER 833

Query: 186 QMKQSSDDEQ 215
           Q+++   ++Q
Sbjct: 834 QLEKVKQEKQ 843


>SB_13473| Best HMM Match : DUF1040 (HMM E-Value=1.5)
          Length = 154

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
 Frame = +3

Query: 45  LRKRVAVFLEQ-TEPLRAEMERKFHAINKLYEIIEYLRSFEKVDDLSRQMKQSSDDEQLV 221
           +R  V   LE    P  +E  + F  I +  EI   LRS E  DD S  + Q       +
Sbjct: 41  IRHFVTEVLEMIAPPYSSEFVQLFLPIVRNEEITGSLRSSEGTDDASAFIGQFCH----L 96

Query: 222 LLYGELKHMCQLYQKGHR 275
           ++ G    +   Y+KGHR
Sbjct: 97  IVQGPSPSLADAYEKGHR 114


>SB_41259| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 961

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 9   MQIQNLKVISNELRKRVAVFLEQTEPLRAEMER 107
           MQ + LKV +NEL K      ++ E LRAE+ +
Sbjct: 143 MQSKRLKVENNELLKAAQTQDQEIESLRAELRK 175


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,985,297
Number of Sequences: 59808
Number of extensions: 334654
Number of successful extensions: 974
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)