Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g16f
         (635 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC068483-1|AAH68483.1|  792|Homo sapiens RAD50 interactor 1 prot...    62   2e-09
AF317622-1|AAG42101.1|  821|Homo sapiens RAD50-interacting prote...    62   2e-09
BC000616-1|AAH00616.1|  585|Homo sapiens SWAP-70 protein protein.      31   3.4  
AF210818-1|AAF24486.1|  585|Homo sapiens SWAP-70 protein.              31   3.4  
AF134894-1|AAF61403.1|  585|Homo sapiens SWAP-70 homolog protein.      31   3.4  
AB014540-1|BAA31615.1|  603|Homo sapiens KIAA0640 protein protein.     31   3.4  
U42391-1|AAC50402.1| 2022|Homo sapiens myosin-IXb protein.             30   6.0  
BC018108-1|AAH18108.2|  501|Homo sapiens MYO9B protein protein.        30   6.0  
AB209997-1|BAE06079.1| 2028|Homo sapiens MYO9B variant protein p...    30   6.0  

>BC068483-1|AAH68483.1|  792|Homo sapiens RAD50 interactor 1
           protein.
          Length = 792

 Score = 62.1 bits (144), Expect = 2e-09
 Identities = 45/201 (22%), Positives = 83/201 (41%), Gaps = 16/201 (7%)
 Frame = +3

Query: 81  EPLRAEMERKFHAINKLYEIIEYLRSFEKVDDLSRQMKQSSDDEQLVLLYGELKHMCQLY 260
           +P   ++      I ++   + YL+   ++++LS  ++Q      +      L  M +L 
Sbjct: 139 QPWMDDLGTMISQIEEIERHLAYLKWISQIEELSDNIQQYLMTNNVPEAASTLVSMAELD 198

Query: 261 QK------GHRGNYVKEYTHYWHNVLKDKLTQHFDEVMKLLKWPFIS-------GAEHSP 401
            K       H   +++    +WH +LKDKLT  F+E++  L WPFI+       G     
Sbjct: 199 IKLQESSCTHLLGFMRATVKFWHKILKDKLTSDFEEILAQLHWPFIAPPQSQTVGLSRPA 258

Query: 402 PPKEVMIKFTNLIRYLFLIEEPEDLNIN-AAVAQDFGQELNPCXX--XXXXXXXXXXXFA 572
              E+      L   L  ++  ++L      + + +    +P                F 
Sbjct: 259 SAPEIYSYLETLFCQLLKLQTSDELLTEPKQLPEKYSLPASPSVILPIQVMLTPLQKRFR 318

Query: 573 FHFMGSRQTARIDRPEWFLTQ 635
           +HF G+RQT  + +PEW+L Q
Sbjct: 319 YHFRGNRQTNVLSKPEWYLAQ 339


>AF317622-1|AAG42101.1|  821|Homo sapiens RAD50-interacting protein
           1 protein.
          Length = 821

 Score = 62.1 bits (144), Expect = 2e-09
 Identities = 45/201 (22%), Positives = 83/201 (41%), Gaps = 16/201 (7%)
 Frame = +3

Query: 81  EPLRAEMERKFHAINKLYEIIEYLRSFEKVDDLSRQMKQSSDDEQLVLLYGELKHMCQLY 260
           +P   ++      I ++   + YL+   ++++LS  ++Q      +      L  M +L 
Sbjct: 168 QPWMDDLGTMISQIEEIERHLAYLKWISQIEELSDNIQQYLMTNNVPEAASTLVSMAELD 227

Query: 261 QK------GHRGNYVKEYTHYWHNVLKDKLTQHFDEVMKLLKWPFIS-------GAEHSP 401
            K       H   +++    +WH +LKDKLT  F+E++  L WPFI+       G     
Sbjct: 228 IKLQESSCTHLLGFMRATVKFWHKILKDKLTSDFEEILAQLHWPFIAPPQSQTVGLSRPA 287

Query: 402 PPKEVMIKFTNLIRYLFLIEEPEDLNIN-AAVAQDFGQELNPCXX--XXXXXXXXXXXFA 572
              E+      L   L  ++  ++L      + + +    +P                F 
Sbjct: 288 SAPEIYSYLETLFCQLLKLQTSDELLTEPKQLPEKYSLPASPSVILPIQVMLTPLQKRFR 347

Query: 573 FHFMGSRQTARIDRPEWFLTQ 635
           +HF G+RQT  + +PEW+L Q
Sbjct: 348 YHFRGNRQTNVLSKPEWYLAQ 368


>BC000616-1|AAH00616.1|  585|Homo sapiens SWAP-70 protein protein.
          Length = 585

 Score = 31.1 bits (67), Expect = 3.4
 Identities = 15/58 (25%), Positives = 36/58 (62%)
 Frame = +3

Query: 42  ELRKRVAVFLEQTEPLRAEMERKFHAINKLYEIIEYLRSFEKVDDLSRQMKQSSDDEQ 215
           EL+ R +  LE+ + +R +ME +     K  E+ +YL+   +++D+  +++++ +DE+
Sbjct: 382 ELQARFSTELEREKLIRQQMEEQ--VAQKSSELEQYLQRVRELEDMYLKLQEALEDER 437


>AF210818-1|AAF24486.1|  585|Homo sapiens SWAP-70 protein.
          Length = 585

 Score = 31.1 bits (67), Expect = 3.4
 Identities = 15/58 (25%), Positives = 36/58 (62%)
 Frame = +3

Query: 42  ELRKRVAVFLEQTEPLRAEMERKFHAINKLYEIIEYLRSFEKVDDLSRQMKQSSDDEQ 215
           EL+ R +  LE+ + +R +ME +     K  E+ +YL+   +++D+  +++++ +DE+
Sbjct: 382 ELQARFSTELEREKLIRQQMEEQ--VAQKSSELEQYLQRVRELEDMYLKLQEALEDER 437


>AF134894-1|AAF61403.1|  585|Homo sapiens SWAP-70 homolog protein.
          Length = 585

 Score = 31.1 bits (67), Expect = 3.4
 Identities = 15/58 (25%), Positives = 36/58 (62%)
 Frame = +3

Query: 42  ELRKRVAVFLEQTEPLRAEMERKFHAINKLYEIIEYLRSFEKVDDLSRQMKQSSDDEQ 215
           EL+ R +  LE+ + +R +ME +     K  E+ +YL+   +++D+  +++++ +DE+
Sbjct: 382 ELQARFSTELEREKLIRQQMEEQ--VAQKSSELEQYLQRVRELEDMYLKLQEALEDER 437


>AB014540-1|BAA31615.1|  603|Homo sapiens KIAA0640 protein protein.
          Length = 603

 Score = 31.1 bits (67), Expect = 3.4
 Identities = 15/58 (25%), Positives = 36/58 (62%)
 Frame = +3

Query: 42  ELRKRVAVFLEQTEPLRAEMERKFHAINKLYEIIEYLRSFEKVDDLSRQMKQSSDDEQ 215
           EL+ R +  LE+ + +R +ME +     K  E+ +YL+   +++D+  +++++ +DE+
Sbjct: 400 ELQARFSTELEREKLIRQQMEEQ--VAQKSSELEQYLQRVRELEDMYLKLQEALEDER 455


>U42391-1|AAC50402.1| 2022|Homo sapiens myosin-IXb protein.
          Length = 2022

 Score = 30.3 bits (65), Expect = 6.0
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
 Frame = +3

Query: 75   QTEPLRAEMER-KFHAINK-----LYEIIEYLRSFEKVDDLSRQMKQSSDDEQLVLLYGE 236
            QT+P   ++E    HAI       L E+ E L +F +  D  R ++     EQL  +Y  
Sbjct: 1751 QTDPAAVKLENFPIHAITGVLKQWLRELPEPLMTFAQYGDFLRAVELPEKQEQLAAIYAV 1810

Query: 237  LKHM 248
            L+H+
Sbjct: 1811 LEHL 1814


>BC018108-1|AAH18108.2|  501|Homo sapiens MYO9B protein protein.
          Length = 501

 Score = 30.3 bits (65), Expect = 6.0
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
 Frame = +3

Query: 75  QTEPLRAEMER-KFHAINK-----LYEIIEYLRSFEKVDDLSRQMKQSSDDEQLVLLYGE 236
           QT+P   ++E    HAI       L E+ E L +F +  D  R ++     EQL  +Y  
Sbjct: 95  QTDPAAVKLENFPIHAITGVLKQWLRELPEPLMTFAQYGDFLRAVELPEKQEQLAAIYAV 154

Query: 237 LKHM 248
           L+H+
Sbjct: 155 LEHL 158


>AB209997-1|BAE06079.1| 2028|Homo sapiens MYO9B variant protein
            protein.
          Length = 2028

 Score = 30.3 bits (65), Expect = 6.0
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
 Frame = +3

Query: 75   QTEPLRAEMER-KFHAINK-----LYEIIEYLRSFEKVDDLSRQMKQSSDDEQLVLLYGE 236
            QT+P   ++E    HAI       L E+ E L +F +  D  R ++     EQL  +Y  
Sbjct: 1757 QTDPAAVKLENFPIHAITGVLKQWLRELPEPLMTFAQYGDFLRAVELPEKQEQLAAIYAV 1816

Query: 237  LKHM 248
            L+H+
Sbjct: 1817 LEHL 1820


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,684,293
Number of Sequences: 237096
Number of extensions: 1703222
Number of successful extensions: 4174
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4171
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6972732040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)