Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g16f
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067942-7|AAG45571.2|  200|Caenorhabditis elegans Hypothetical ...    30   1.6  
Z78200-4|CAB01582.1|  289|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z92790-4|CAB07227.2|  227|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AL021493-6|CAA16394.2|  781|Caenorhabditis elegans Hypothetical ...    28   4.9  
Z71266-7|CAA95845.1|  987|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AF003740-3|AAC48137.2|  365|Caenorhabditis elegans Eukaryotic in...    28   6.4  
Z80219-7|CAN86594.1|  804|Caenorhabditis elegans Hypothetical pr...    27   8.5  
Z80219-6|CAI70409.1|  734|Caenorhabditis elegans Hypothetical pr...    27   8.5  
Z80219-5|CAB02302.2|  784|Caenorhabditis elegans Hypothetical pr...    27   8.5  
Z80219-4|CAE17938.1|  745|Caenorhabditis elegans Hypothetical pr...    27   8.5  
Z80219-1|CAB02301.2|  727|Caenorhabditis elegans Hypothetical pr...    27   8.5  
Z75546-12|CAN86896.1|  804|Caenorhabditis elegans Hypothetical p...    27   8.5  
Z75546-11|CAI70402.1|  734|Caenorhabditis elegans Hypothetical p...    27   8.5  
Z75546-10|CAA99896.2|  784|Caenorhabditis elegans Hypothetical p...    27   8.5  
Z75546-9|CAE17895.1|  745|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>AF067942-7|AAG45571.2|  200|Caenorhabditis elegans Hypothetical
           protein ZK6.3 protein.
          Length = 200

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = +3

Query: 186 QMKQSSDDEQLVLLYGELKHMCQLYQKGHRGNYVKE---YTHYWHNVLKDKLTQHFDEVM 356
           QM     ++ L    G +KH CQ  ++ +   ++K    Y  Y++N + D L Q  DE++
Sbjct: 54  QMMMMKWNQSLAEAVGNVKHSCQQLKERYLKKFIKGENLYRVYFYNTVVDGL-QERDEIL 112

Query: 357 KLLKWPFISGA 389
           +  +    +GA
Sbjct: 113 RRSEKAVSTGA 123


>Z78200-4|CAB01582.1|  289|Caenorhabditis elegans Hypothetical
           protein T04H1.5 protein.
          Length = 289

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 23/98 (23%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
 Frame = +3

Query: 75  QTEPLRAEMERKFHAINKLYEIIEYLRSFEKVDDLSRQMKQSSDDEQLVLLYGELKHMCQ 254
           + E ++   ER    + K+ E  +  +  E +DD S++ K  ++ +QLV      + +C+
Sbjct: 120 EVEAVQERNERVEAVMQKMKE--QAAKHEELIDDYSKRRKLDANSKQLVKDIRSCRKVCE 177

Query: 255 LYQKGHR-GNYVKEYTHYW--HNVLKDKLTQHFDEVMK 359
             +  HR G  V   + +W  + V +++ T +  +V K
Sbjct: 178 --ELDHRIGKKVPSVSWFWRSYKVAQEETTSYHKKVEK 213


>Z92790-4|CAB07227.2|  227|Caenorhabditis elegans Hypothetical
           protein H03G16.5 protein.
          Length = 227

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +3

Query: 87  LRAEMERKFHAINKLYEIIEYLRSFEKVDDLSRQMKQ-SSDDEQLVL 224
           L    E+K   INK +E +E  +SF + +DL  + ++ SS D Q+V+
Sbjct: 138 LETSQEQK-GVINKAFEELESTKSFAQDNDLGNKSEESSSSDTQVVV 183


>AL021493-6|CAA16394.2|  781|Caenorhabditis elegans Hypothetical
           protein Y51A2B.6 protein.
          Length = 781

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 17/70 (24%), Positives = 39/70 (55%)
 Frame = +3

Query: 15  IQNLKVISNELRKRVAVFLEQTEPLRAEMERKFHAINKLYEIIEYLRSFEKVDDLSRQMK 194
           +Q LK  S   +K + V +++   L  +  +    I  +  + E+L++  KV ++S +MK
Sbjct: 549 LQQLKQDSEHFQKVIQV-IQKMRNLDKDSVQNIQGIPSV--VSEFLKNLAKVREISDKMK 605

Query: 195 QSSDDEQLVL 224
           ++S+++  V+
Sbjct: 606 ENSNNKTFVM 615


>Z71266-7|CAA95845.1|  987|Caenorhabditis elegans Hypothetical
           protein R06C7.8 protein.
          Length = 987

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +3

Query: 252 QLYQKGHRGNYVKEYTHYWHNVLKDKLTQHFDEVMKLLK 368
           QL++K H    +K Y  +     KD++ + F +V+KL +
Sbjct: 87  QLFKKDHFTGSLKFYLQWAEECGKDQMLEEFKDVLKLAR 125


>AF003740-3|AAC48137.2|  365|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.H protein.
          Length = 365

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
 Frame = +3

Query: 72  EQTEPLRAEMERKFHAINKLYEIIEYLRSFEKVDDLSRQMKQSSDD------EQLVLLYG 233
           EQ +    +M RKF  +N  YEI+ + +S +     S  + +S  D      E +VL+Y 
Sbjct: 87  EQKQHEMLDMLRKFRTMNIDYEIVGFYQSHQFGAGFSHDLVESMFDYQAMGPENVVLIYD 146

Query: 234 ELK 242
            +K
Sbjct: 147 PIK 149


>Z80219-7|CAN86594.1|  804|Caenorhabditis elegans Hypothetical
           protein T01H8.1e protein.
          Length = 804

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +3

Query: 78  TEPLRAEMERKFHAINKLYEIIEYLRSFEKVDDLSRQMKQSSDDEQLVL 224
           + P   ++   F    KLY I+++LR  +    LS+++  + DD +  L
Sbjct: 156 SHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEDDVKFYL 204


>Z80219-6|CAI70409.1|  734|Caenorhabditis elegans Hypothetical
           protein T01H8.1d protein.
          Length = 734

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +3

Query: 78  TEPLRAEMERKFHAINKLYEIIEYLRSFEKVDDLSRQMKQSSDDEQLVL 224
           + P   ++   F    KLY I+++LR  +    LS+++  + DD +  L
Sbjct: 143 SHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEDDVKFYL 191


>Z80219-5|CAB02302.2|  784|Caenorhabditis elegans Hypothetical
           protein T01H8.1a protein.
          Length = 784

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +3

Query: 78  TEPLRAEMERKFHAINKLYEIIEYLRSFEKVDDLSRQMKQSSDDEQLVL 224
           + P   ++   F    KLY I+++LR  +    LS+++  + DD +  L
Sbjct: 162 SHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEDDVKFYL 210


>Z80219-4|CAE17938.1|  745|Caenorhabditis elegans Hypothetical
           protein T01H8.1c protein.
          Length = 745

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +3

Query: 78  TEPLRAEMERKFHAINKLYEIIEYLRSFEKVDDLSRQMKQSSDDEQLVL 224
           + P   ++   F    KLY I+++LR  +    LS+++  + DD +  L
Sbjct: 123 SHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEDDVKFYL 171


>Z80219-1|CAB02301.2|  727|Caenorhabditis elegans Hypothetical
           protein T01H8.1b protein.
          Length = 727

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +3

Query: 78  TEPLRAEMERKFHAINKLYEIIEYLRSFEKVDDLSRQMKQSSDDEQLVL 224
           + P   ++   F    KLY I+++LR  +    LS+++  + DD +  L
Sbjct: 105 SHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEDDVKFYL 153


>Z75546-12|CAN86896.1|  804|Caenorhabditis elegans Hypothetical
           protein T01H8.1e protein.
          Length = 804

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +3

Query: 78  TEPLRAEMERKFHAINKLYEIIEYLRSFEKVDDLSRQMKQSSDDEQLVL 224
           + P   ++   F    KLY I+++LR  +    LS+++  + DD +  L
Sbjct: 156 SHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEDDVKFYL 204


>Z75546-11|CAI70402.1|  734|Caenorhabditis elegans Hypothetical
           protein T01H8.1d protein.
          Length = 734

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +3

Query: 78  TEPLRAEMERKFHAINKLYEIIEYLRSFEKVDDLSRQMKQSSDDEQLVL 224
           + P   ++   F    KLY I+++LR  +    LS+++  + DD +  L
Sbjct: 143 SHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEDDVKFYL 191


>Z75546-10|CAA99896.2|  784|Caenorhabditis elegans Hypothetical
           protein T01H8.1a protein.
          Length = 784

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +3

Query: 78  TEPLRAEMERKFHAINKLYEIIEYLRSFEKVDDLSRQMKQSSDDEQLVL 224
           + P   ++   F    KLY I+++LR  +    LS+++  + DD +  L
Sbjct: 162 SHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEDDVKFYL 210


>Z75546-9|CAE17895.1|  745|Caenorhabditis elegans Hypothetical
           protein T01H8.1c protein.
          Length = 745

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/49 (26%), Positives = 25/49 (51%)
 Frame = +3

Query: 78  TEPLRAEMERKFHAINKLYEIIEYLRSFEKVDDLSRQMKQSSDDEQLVL 224
           + P   ++   F    KLY I+++LR  +    LS+++  + DD +  L
Sbjct: 123 SHPFIVKLHYAFQTEGKLYLILDFLRGGDLFTRLSKEVMFTEDDVKFYL 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,940,842
Number of Sequences: 27780
Number of extensions: 281646
Number of successful extensions: 787
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)