Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g15r
         (751 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55174| Best HMM Match : AP_endonuc_2 (HMM E-Value=2.4e-36)          69   3e-12
SB_50102| Best HMM Match : Phage_fiber (HMM E-Value=8.2e-06)           30   2.3  
SB_23440| Best HMM Match : BAT2_N (HMM E-Value=7.5)                    30   2.3  
SB_14151| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_22474| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_34303| Best HMM Match : Pkinase (HMM E-Value=0)                     29   5.3  
SB_42965| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_33304| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=7.00649e-45)    29   5.3  
SB_7384| Best HMM Match : CXC (HMM E-Value=2.2e-05)                    28   7.0  
SB_36973| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_21192| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_55174| Best HMM Match : AP_endonuc_2 (HMM E-Value=2.4e-36)
          Length = 260

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 1/116 (0%)
 Frame = -1

Query: 619 LIEPINQYSMPKYFLSDYGRAVDIIKRIDSPNLRLMLDIFHLQQIAGDITHNITKLLPYI 440
           ++E IN   +P + ++   +   ++K +  PNL    D++H+ +   D+   I  L   I
Sbjct: 140 VVEAINPLDIPGFLINTPEQLDALLKAVAHPNLAAQYDLYHMARQGLDVQAGIVLLAGRI 199

Query: 439 GHVQIAQVPNRNEPDTPGEINYKYVLEHLAKSGYDEWVGLEYK-AIGNTKDGLTWI 275
           GHVQ A  P R  P T GE+ +  +L  L  SGY  W+  EY+     T+  L W+
Sbjct: 200 GHVQFADYPGRGAPGT-GELQFAPLLTALRDSGYQGWLAAEYRPGEAGTQASLGWL 254


>SB_50102| Best HMM Match : Phage_fiber (HMM E-Value=8.2e-06)
          Length = 274

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = +2

Query: 431 HMSNVWQ*FRNIMSNVASDLLKMKNVQHQSQIWTVNTFNNVHSSSIITQ 577
           H S++W    N   N  S LL   N  H S++WT    N  H+SS+ TQ
Sbjct: 17  HNSSLWT-QGNTTHN--SSLLTQGNTTHNSRLWTQG--NTTHNSSLWTQ 60



 Score = 29.5 bits (63), Expect = 3.0
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = +2

Query: 431 HMSNVWQ*FRNIMSNVASDLLKMKNVQHQSQIWTVNTFNNVHSSSIITQ 577
           H S++W    N   N  S LL   N  H S +WT    N  H+SS+ TQ
Sbjct: 174 HNSSLWT-QGNTTHN--SSLLTQGNTTHNSSLWTQG--NTTHNSSLWTQ 217


>SB_23440| Best HMM Match : BAT2_N (HMM E-Value=7.5)
          Length = 262

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = -1

Query: 499 HLQQIAGDITHNITKLLPYIG---HVQIAQVPNRNEPDT 392
           H QQ+A +IT+N  K  P IG   H Q AQ    N P T
Sbjct: 210 HHQQLAQNITNNRPKTSPTIGPKHHQQSAQNNTNNRPKT 248


>SB_14151| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 241

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = +2

Query: 431 HMSNVWQ*FRNIMSNVASDLLKMKNVQHQSQIWTVNTFNNVHSSSIITQ 577
           H S++W    N   N  S LL   N  H S +WT    N  H+SS+ TQ
Sbjct: 141 HNSSLWT-QGNTTHN--SSLLTQGNTTHNSSLWTQG--NTTHNSSLWTQ 184


>SB_22474| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 642

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +2

Query: 260 VTIIVD--PSQTILRVSDGFIFESNPFIVSALSQVF 361
           +T+ +D  P QTILRV D F++E N  +      VF
Sbjct: 518 LTVFIDSFPIQTILRVWDTFLYEGNKVLFRYALAVF 553


>SB_34303| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 226

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = -1

Query: 562 RAVDIIKRIDS---PNLRLMLDIFHLQQIAGDITH 467
           R + ++K+ID+   PN+  +LDIFH+  +    TH
Sbjct: 52  REIALLKQIDNFAHPNVVRLLDIFHIPMLTARETH 86


>SB_42965| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 760

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = -1

Query: 436 HVQIAQVPNRNEPDTPGEINYKYVLEHLAKSGYDEWVGLEYKAIGNTKD 290
           H+ I    ++         +YK  L    KS  D+W G  +  IGNT D
Sbjct: 569 HILIGNTHDQQGKYEEARGHYKEALRLYQKSSDDQWQGKAHILIGNTHD 617


>SB_33304| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=7.00649e-45)
          Length = 638

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = -1

Query: 577 LSDYGRAVDII--KRIDSPNLRLMLDIFHLQQIAGDITHNITKLLPYIGHVQIAQVPNRN 404
           ++  G AV +I  + I  P  +L L  FH+  +AG ++   + +  + G +++  +    
Sbjct: 508 MTQKGEAVGVIAAQSIGEPGTQLTLRTFHVGGVAGGLSEESSIITKFKGRLEVEDLKTVK 567

Query: 403 EPDTPGE 383
             D  G+
Sbjct: 568 GEDADGK 574


>SB_7384| Best HMM Match : CXC (HMM E-Value=2.2e-05)
          Length = 422

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 10  TNAIRHKYQSSTFTPQYYCIIF*ESKIEQGNFVRIKLK 123
           +N I H+ + S    QY C+   E +++Q N  + KL+
Sbjct: 307 SNNIEHERERSKAIKQYMCLYIAEVRVKQQNAAKTKLE 344


>SB_36973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 485 DLLKMKNVQHQSQI-WTVNTFNNVHSSSIITQEIFGHRILVDWFD 616
           D++  +N Q    +    NTFN+  S +  +  IFGH    DW +
Sbjct: 153 DMMMSRNPQQMQNLDHAANTFNDCQSHTYQSNTIFGH---ADWME 194


>SB_21192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = -1

Query: 406 NEPDTPG----EINYKYVLEHLAKSGYDEWVGLEYKAIGNTKDGLTWINNYGYSL 254
           N+ D PG     I +K  LEHL K+       LE +A+GN +   T I+ + + L
Sbjct: 30  NDVDLPGVWFFRIPHKVTLEHLVKNAARRCWCLEAEALGNRRSS-TIIDLFSFPL 83


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,945,708
Number of Sequences: 59808
Number of extensions: 440607
Number of successful extensions: 1211
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)