Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g15r
         (751 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00048-2|AAB53826.1|  262|Caenorhabditis elegans Hypothetical pr...   119   3e-27
Z81579-8|CAN86617.1|  930|Caenorhabditis elegans Hypothetical pr...    34   0.094
Z81579-7|CAB61019.1|  927|Caenorhabditis elegans Hypothetical pr...    34   0.094
AF016852-1|AAB94551.1|  927|Caenorhabditis elegans HMP-1 protein.      34   0.094
AL023853-1|CAA19558.1|  370|Caenorhabditis elegans Hypothetical ...    30   2.0  
AL132951-6|CAC44308.2|  692|Caenorhabditis elegans Hypothetical ...    29   2.7  
AC024845-4|AAK84623.2|  214|Caenorhabditis elegans Hypothetical ...    28   8.1  

>U00048-2|AAB53826.1|  262|Caenorhabditis elegans Hypothetical
           protein C05D11.5 protein.
          Length = 262

 Score =  119 bits (286), Expect = 3e-27
 Identities = 63/162 (38%), Positives = 96/162 (59%), Gaps = 3/162 (1%)
 Frame = -1

Query: 733 KIHIMAG--KVENPTPEHWETFEKNLLYAVDVLKGENIQGLIEPINQYSMPKYFLSDYGR 560
           ++H+MAG  K ++      +T+ +N+ +A +  K   +  LIEPIN+Y++P Y L++Y  
Sbjct: 104 RVHVMAGIPKSDDDLENAHQTYSENVRFAAEKFKEHKLICLIEPINKYTIPGYHLNNYED 163

Query: 559 AVDIIKRIDSPNLRLMLDIFHLQQIAGDITHNITKLLPYIGHVQIAQVPNRNEPDTPGEI 380
           A+D+I+   S NL++  D FH QQI G I   + KL  YIG++Q+AQVPNR   DT GEI
Sbjct: 164 AMDVIQMDQSNNLKIQYDTFHAQQINGQIGAIMRKLKDYIGYIQVAQVPNRGACDTRGEI 223

Query: 379 NYKYVLEHLAKSGYDEWV-GLEYKAIGNTKDGLTWINNYGYS 257
           +Y ++ + + +S    WV G EY    + K    WI N   S
Sbjct: 224 DYHFIFDEI-RSINPSWVIGAEYL---DAKPSFNWIENMSLS 261


>Z81579-8|CAN86617.1|  930|Caenorhabditis elegans Hypothetical
           protein R13H4.4b protein.
          Length = 930

 Score = 34.3 bits (75), Expect = 0.094
 Identities = 21/69 (30%), Positives = 33/69 (47%)
 Frame = -1

Query: 694 PEHWETFEKNLLYAVDVLKGENIQGLIEPINQYSMPKYFLSDYGRAVDIIKRIDSPNLRL 515
           PEH E   +N  Y  D +   +    +E +     PK   S+YGR  D+I  ID+   R+
Sbjct: 227 PEHEEA-RRNRDYTADEM--HSALNALESVLNGQQPKVTFSEYGRIGDLINEIDTFQNRI 283

Query: 514 MLDIFHLQQ 488
            +D  H ++
Sbjct: 284 EIDPAHYRR 292


>Z81579-7|CAB61019.1|  927|Caenorhabditis elegans Hypothetical
           protein R13H4.4a protein.
          Length = 927

 Score = 34.3 bits (75), Expect = 0.094
 Identities = 21/69 (30%), Positives = 33/69 (47%)
 Frame = -1

Query: 694 PEHWETFEKNLLYAVDVLKGENIQGLIEPINQYSMPKYFLSDYGRAVDIIKRIDSPNLRL 515
           PEH E   +N  Y  D +   +    +E +     PK   S+YGR  D+I  ID+   R+
Sbjct: 227 PEHEEA-RRNRDYTADEM--HSALNALESVLNGQQPKVTFSEYGRIGDLINEIDTFQNRI 283

Query: 514 MLDIFHLQQ 488
            +D  H ++
Sbjct: 284 EIDPAHYRR 292


>AF016852-1|AAB94551.1|  927|Caenorhabditis elegans HMP-1 protein.
          Length = 927

 Score = 34.3 bits (75), Expect = 0.094
 Identities = 21/69 (30%), Positives = 33/69 (47%)
 Frame = -1

Query: 694 PEHWETFEKNLLYAVDVLKGENIQGLIEPINQYSMPKYFLSDYGRAVDIIKRIDSPNLRL 515
           PEH E   +N  Y  D +   +    +E +     PK   S+YGR  D+I  ID+   R+
Sbjct: 227 PEHEEA-RRNRDYTADEM--HSALNALESVLNGQQPKVTFSEYGRIGDLINEIDTFQNRI 283

Query: 514 MLDIFHLQQ 488
            +D  H ++
Sbjct: 284 EIDPAHYRR 292


>AL023853-1|CAA19558.1|  370|Caenorhabditis elegans Hypothetical
           protein Y71A12C.1 protein.
          Length = 370

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -1

Query: 718 AGKVENPTPEHWETFEKNLLYAVDVLKGENIQGLIEPINQYSM 590
           A K++NPT  HW     N +  +D LK  N    I P +Q S+
Sbjct: 133 AKKLQNPTCHHWSLL--NQITTIDFLKKINFPQAINPEDQGSI 173


>AL132951-6|CAC44308.2|  692|Caenorhabditis elegans Hypothetical
           protein Y67H2A.7 protein.
          Length = 692

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 595 SMPKYFLSDYGRAVDIIKRIDSPNLRLMLD 506
           ++ +YF SD G   DII+R D P  +L ++
Sbjct: 501 NLMEYFFSDLGVMTDIIRRTDRPEEQLSIE 530


>AC024845-4|AAK84623.2|  214|Caenorhabditis elegans Hypothetical
           protein Y65B4BL.7 protein.
          Length = 214

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 22/87 (25%), Positives = 42/87 (48%)
 Frame = +2

Query: 269 IVDPSQTILRVSDGFIFESNPFIVSALSQVF*NVLVVYLSGRVRFVTIRNLSYLHMSNVW 448
           IV+     LRVS  F+F     IV +++Q+   V    ++ R+R       S+++MS  +
Sbjct: 78  IVEYCDLCLRVSMEFMFPVGVLIVFSITQILITV-SPGMASRIRNPIPSLASFIYMSFFF 136

Query: 449 Q*FRNIMSNVASDLLKMKNVQHQSQIW 529
           +   N+++++A  +L       Q   W
Sbjct: 137 KCITNLLTSIA--MLPYLGCTDQPSFW 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,815,901
Number of Sequences: 27780
Number of extensions: 353313
Number of successful extensions: 918
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)