Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g15r
         (751 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10780.1 68417.m01758 disease resistance protein (CC-NBS-LRR ...    29   3.3  
At2g16860.1 68415.m01939 GCIP-interacting family protein similar...    28   7.6  

>At4g10780.1 68417.m01758 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 892

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/65 (29%), Positives = 28/65 (43%)
 Frame = +2

Query: 392 RVRFVTIRNLSYLHMSNVWQ*FRNIMSNVASDLLKMKNVQHQSQIWTVNTFNNVHSSSII 571
           RV+    + L  L    VW     I+ N   DLL  +N++ Q   +  N   N+ SS   
Sbjct: 56  RVQMEEGKGLERLQQVQVWLKRVEIIRNQFYDLLSARNIEIQRLCFYSNCSTNLSSSYTY 115

Query: 572 TQEIF 586
            Q +F
Sbjct: 116 GQRVF 120


>At2g16860.1 68415.m01939 GCIP-interacting family protein similar to
           GCIP-interacting protein mp29 (GI:27372623) [Mus
           musculus]; similar to GCIP-interacting protein P29
           (GI:11967379) [Homo sapiens]
          Length = 298

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 706 ENPTPEHWETFEKNLLYAVDVLKGENIQGLIEPINQ 599
           + PTP  W+ F +  LY     + +NIQ  +E  N+
Sbjct: 169 KEPTPAGWDVFNQKTLYNAYKKRTKNIQVDLEEYNR 204


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,588,988
Number of Sequences: 28952
Number of extensions: 316979
Number of successful extensions: 783
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)