Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10g15f
(644 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0138 - 1069616-1069894,1070056-1070607,1070689-1071046,107... 33 0.19
11_01_0137 - 1137979-1138257,1138419-1138970,1139052-1139409,113... 33 0.19
07_03_1344 - 25912639-25914060 31 0.59
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 31 0.78
12_02_1277 + 27497773-27500241 28 7.3
09_06_0244 + 21822811-21823246,21823337-21823468,21823949-218240... 28 7.3
03_04_0116 + 17406702-17409008,17409385-17409501,17409502-17409561 28 7.3
01_05_0773 + 25062364-25062894,25063000-25063244,25063365-250637... 28 7.3
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 27 9.7
>12_01_0138 -
1069616-1069894,1070056-1070607,1070689-1071046,
1071214-1071503,1072257-1072360,1072419-1072575,
1073229-1073273,1073636-1073692
Length = 613
Score = 33.1 bits (72), Expect = 0.19
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +3
Query: 261 VGVTSVPGKEDEFKTNLNTTIEYAKALDAKKIHIMAGKVENPTPKHWETFEKNLL 425
+GV ++P + N+ T+EY K+ + K+E+PT H+ F KN+L
Sbjct: 271 LGVQTMP--KTHHCLNMRLTVEYFKSTSIHTVQSNKQKLEDPTFHHYVIFSKNVL 323
>11_01_0137 -
1137979-1138257,1138419-1138970,1139052-1139409,
1139577-1139869,1140623-1140675,1140785-1140941,
1141666-1141683,1141846-1141929,1142005-1142064,
1142182-1142222,1142316-1142451
Length = 676
Score = 33.1 bits (72), Expect = 0.19
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +3
Query: 261 VGVTSVPGKEDEFKTNLNTTIEYAKALDAKKIHIMAGKVENPTPKHWETFEKNLL 425
+GV ++P + N+ T+EY K+ + K+E+PT H+ F KN+L
Sbjct: 334 LGVQTMP--KTHHCLNMRLTVEYFKSTSIHTVQSNKQKLEDPTFHHYVIFSKNVL 386
>07_03_1344 - 25912639-25914060
Length = 473
Score = 31.5 bits (68), Expect = 0.59
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +3
Query: 126 DAGFKAVESGFPFGFSLEQVRNAKQSAGLQQIAINLKTGDTTKGEVGV 269
+AG A+ S VR ++A + Q ++ L TG+T GE+GV
Sbjct: 244 EAGIGAIASQLADRLPAGSVRLNSRAAAIGQSSVTLDTGETVSGELGV 291
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 31.1 bits (67), Expect = 0.78
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -3
Query: 426 IANFSQTSPNVSELDFPLYQPLCEFFSRPRPSH 328
++ +SQTSPN S P Y P +S+P PS+
Sbjct: 1766 LSPYSQTSPNYSPTS-PTYSPTSPSYSQPSPSY 1797
>12_02_1277 + 27497773-27500241
Length = 822
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 9 LLQSRKEIVLN-FIIMKFCANLSFMFAEASSILERYALAKDAGFKAVESGFPF 164
LL S+ +VL+ F++ + A++ + + +E L KD GF+ PF
Sbjct: 288 LLVSKINLVLSSFVLPLYVAHVCLSLRQTTDDIEAAGLRKDQGFRVYVMELPF 340
>09_06_0244 + 21822811-21823246,21823337-21823468,21823949-21824037,
21824135-21824224,21825033-21825603,21826097-21826734,
21826978-21827098,21827223-21827337,21828234-21829723,
21829830-21829901,21830151-21830196,21830413-21830515,
21830591-21830674,21831035-21831475,21831651-21831746,
21831896-21832045,21832131-21832274,21832414-21832527,
21832621-21832803,21832901-21832945,21833058-21833192
Length = 1764
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 96 SILERYALAKDAG-FKAVESGFPFGFSLEQVRNAKQSAGLQQIAINLK 236
++ E+ + +D+G FK ++SGF GFS + V S L + + K
Sbjct: 870 TVKEKASACRDSGIFKELKSGFSSGFSSDVVTKFSASPELNKYGLEHK 917
>03_04_0116 + 17406702-17409008,17409385-17409501,17409502-17409561
Length = 827
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -1
Query: 629 FRNIMSNVASDLLKMKNVQHQSQIWTVNTFNNVHS-SSIITQEIFGHRILVDW 474
F I SN + + N ++++ +WT N VH+ S++T + G +L D+
Sbjct: 53 FLTIYSNAFAFSIWYTNSKNKTVVWTANRGRPVHARRSVVTLQKDGAMVLKDY 105
>01_05_0773 +
25062364-25062894,25063000-25063244,25063365-25063749,
25063857-25064282
Length = 528
Score = 27.9 bits (59), Expect = 7.3
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -1
Query: 134 SSVFSQSISFQNGRSFSKHKRQISTEFHYNKI 39
+ +FS S++ G + KH+R ++ FH K+
Sbjct: 145 TKLFSDSLANHEGEKWVKHRRILNPAFHLEKL 176
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 417 FSQTSPNVSELDFPLYQPLCEFFSRPRPSH 328
+S +SPN P Y P +S+P PS+
Sbjct: 1821 YSPSSPNYYSSTSPTYSPTSPSYSQPSPSY 1850
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,122,777
Number of Sequences: 37544
Number of extensions: 290775
Number of successful extensions: 781
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 781
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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