Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10g15f
(644 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55174| Best HMM Match : AP_endonuc_2 (HMM E-Value=2.4e-36) 86 3e-17
SB_59052| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.15
SB_50102| Best HMM Match : Phage_fiber (HMM E-Value=8.2e-06) 29 3.2
SB_34303| Best HMM Match : Pkinase (HMM E-Value=0) 29 4.3
SB_14151| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_51071| Best HMM Match : SNF7 (HMM E-Value=0.16) 28 5.7
SB_36973| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_42485| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 27 9.9
SB_22342| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_55174| Best HMM Match : AP_endonuc_2 (HMM E-Value=2.4e-36)
Length = 260
Score = 85.8 bits (203), Expect = 3e-17
Identities = 52/196 (26%), Positives = 94/196 (47%), Gaps = 2/196 (1%)
Frame = +3
Query: 51 MKFCANLSFMFAEASSILERYALAKDAGFKAVESGFPFGFSLEQVRNAKQSAGLQQIAIN 230
MK ANLS +F E ++ER A AGF VE FP+ +++ A ++AG+ IN
Sbjct: 1 MKIAANLSLLFTELP-LIERVVAAAAAGFDGVEIQFPYELPAIRLKEALEAAGMPLRLIN 59
Query: 231 LKTGDTTKGEVGVTSVPGKEDEFKTNLNTTIEYAKALDAKKIHIMAGKV-ENPTPKH-WE 404
L GD G G+ ++P ++ EF L + YA + ++++ G++ + P+
Sbjct: 60 LPAGDLMSGGPGLAAMPARQAEFDLALKDALSYAAMVRPALVNVLPGRLADGVEPEQALA 119
Query: 405 TFEKNLLYAVDVLKGENIQGLIEPINQYSMPKYFLSDYGRAVDIIKRIDSPNLRLMLDIF 584
NL + + I ++E IN +P + ++ + ++K + PNL D++
Sbjct: 120 CLVDNLHKTAEAFQLLGIGVVVEAINPLDIPGFLINTPEQLDALLKAVAHPNLAAQYDLY 179
Query: 585 HLQQIAGDITHNITKL 632
H+ + D+ I L
Sbjct: 180 HMARQGLDVQAGIVLL 195
>SB_59052| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 33.5 bits (73), Expect = 0.15
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Frame = +3
Query: 267 VTSVPGKEDEFKTNLNTTIEYAKALDAKKIHIMAGKVENPTPKHWET---FEKNLLYAVD 437
+ SV E+ ++ +L+ +++ +KA ++ + +M GK +PT + W+T F N L+ +
Sbjct: 84 ILSVRDNEEIWRKSLDKSLQVSKA-SSRSLWMMVGKQISPTGRKWKTIQDFISNTLFLKN 142
Query: 438 VLKGENI 458
K NI
Sbjct: 143 TDKDSNI 149
>SB_50102| Best HMM Match : Phage_fiber (HMM E-Value=8.2e-06)
Length = 274
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 602 SDLLKMKNVQHQSQIWTVNTFNNVHSSSIITQ 507
S LL N H S++WT N H+SS+ TQ
Sbjct: 31 SSLLTQGNTTHNSRLWTQG--NTTHNSSLWTQ 60
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 602 SDLLKMKNVQHQSQIWTVNTFNNVHSSSIITQ 507
S LL N H S +WT N H+SS+ TQ
Sbjct: 188 SSLLTQGNTTHNSSLWTQG--NTTHNSSLWTQ 217
>SB_34303| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 226
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = +3
Query: 522 RAVDIIKRIDS---PNLRLMLDIFHLQQIAGDITH 617
R + ++K+ID+ PN+ +LDIFH+ + TH
Sbjct: 52 REIALLKQIDNFAHPNVVRLLDIFHIPMLTARETH 86
>SB_14151| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 602 SDLLKMKNVQHQSQIWTVNTFNNVHSSSIITQ 507
S LL N H S +WT N H+SS+ TQ
Sbjct: 155 SSLLTQGNTTHNSSLWTQG--NTTHNSSLWTQ 184
>SB_51071| Best HMM Match : SNF7 (HMM E-Value=0.16)
Length = 417
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -1
Query: 152 RFYSLKSSVFSQSISFQNGRSFSKHKRQISTEFHYNKI 39
R +S + S S S +NG+S + H RQ++ + ++KI
Sbjct: 285 RQHSSATGCSSNSTSRKNGKSSATHNRQMTNGYSHSKI 322
>SB_36973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -1
Query: 599 DLLKMKNVQHQSQI-WTVNTFNNVHSSSIITQEIFGHRILVDWFD 468
D++ +N Q + NTFN+ S + + IFGH DW +
Sbjct: 153 DMMMSRNPQQMQNLDHAANTFNDCQSHTYQSNTIFGH---ADWME 194
>SB_42485| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 1565
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 371 TSHYVNFFRVQGLRIFDC-RIQICFKFVFFTRNRSYANFTFGR 246
++HY N + L + C + C KF F +++ + + FGR
Sbjct: 23 SAHYGNILKTGILELRACAEARACAKFKFLVKHKGFYSAAFGR 65
>SB_22342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +3
Query: 261 VGVTSVPGKEDEFKTNLNTTIEYAKALDAKKIHIMAGKVENP 386
V +TSV K DEF+ + KALD++ ++ +A V P
Sbjct: 521 VSITSVESKTDEFQGDRYFIDAIIKALDSEALYRIAEYVYQP 562
>SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +3
Query: 315 TTIEYAKALDAKKIHIMAGKVENPTPKHWETFEKNLLYAVDVLKGE 452
TT + + + + + +E+ P +WETF + A+ LK E
Sbjct: 188 TTSQSTSSYSLQATNAYSAMLEDEQPNNWETFAHSTTSAIQDLKAE 233
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,939,038
Number of Sequences: 59808
Number of extensions: 343646
Number of successful extensions: 1034
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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