Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g15f
         (644 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10080.1 68417.m01649 expressed protein                             31   0.65 
At4g10650.1 68417.m01739 GTP-binding family protein contains Pfa...    31   0.87 
At5g50780.1 68418.m06291 ATP-binding region, ATPase-like domain-...    30   1.5  
At5g05410.1 68418.m00583 DRE-binding protein (DREB2A) identical ...    28   4.6  
At4g11400.1 68417.m01838 ARID/BRIGHT DNA-binding domain-containi...    28   4.6  
At3g14620.1 68416.m01851 cytochrome P450, putative similar to GB...    28   6.1  
At2g16860.1 68415.m01939 GCIP-interacting family protein similar...    28   6.1  
At1g37130.1 68414.m04639 nitrate reductase 2 (NR2) identical to ...    28   6.1  
At5g65750.1 68418.m08274 2-oxoglutarate dehydrogenase E1 compone...    27   8.1  

>At4g10080.1 68417.m01649 expressed protein
          Length = 325

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 10/145 (6%)
 Frame = +3

Query: 87  EASSILERYALAKD---AGFKAVESGFPFGFSLE---QVRNAKQ---SAGLQQIAINLKT 239
           E+SS+++   +  D   A  + +ESG+   F ++   +  N  +    +GL Q +++   
Sbjct: 26  ESSSVIDDGMILSDHFSATDRVIESGYFDSFRVDYGSECLNPGEVSVDSGLDQFSVSQSG 85

Query: 240 GDTTKGEVGVTSVPGKEDEFKTNLNTTIEYAKALDAKKIHIMAG-KVENPTPKHWETFEK 416
            D  + E GV      E     +    +   +A + K +   A  ++   T  H+ET  +
Sbjct: 86  DDCVRNEFGVYD---SETGILGDGEVRLSDFEAANEKYVESEAATELTGGTVSHYET--E 140

Query: 417 NLLYAVDVLKGENIQGLIEPINQYS 491
           NL   VD   GEN  G+ EPI   S
Sbjct: 141 NLEEFVDGRHGENESGVEEPIEDSS 165


>At4g10650.1 68417.m01739 GTP-binding family protein contains Pfam
           domain, PF01926: GTPase of unknown function
          Length = 332

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 14/37 (37%), Positives = 25/37 (67%)
 Frame = -1

Query: 137 KSSVFSQSISFQNGRSFSKHKRQISTEFHYNKI*YDL 27
           KS   ++S+S ++ +S +KHKRQ +T+   + I YD+
Sbjct: 237 KSQDLTESLSDESSKSDAKHKRQYATDHTQDFIVYDV 273


>At5g50780.1 68418.m06291 ATP-binding region, ATPase-like
           domain-containing protein low similarity to microrchidia
           [Homo sapiens] GI:5410257; contains Pfam profile
           PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
           HSP90-like domain protein
          Length = 823

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
 Frame = +3

Query: 117 LAKDAGFKAVESGFPFGFSLEQVRNAKQSAGLQQIAINLKTGD---TTKGEVGVTSVPGK 287
           ++KD G+K+ E G   G S  +     +  G + + +     D    +  E  VT +PGK
Sbjct: 647 VSKDIGYKSSEKGGKLGNSFSKSNKRAKPQGARAVEVTNSDDDYDCDSSPERNVTELPGK 706

Query: 288 EDE 296
             E
Sbjct: 707 SSE 709


>At5g05410.1 68418.m00583 DRE-binding protein (DREB2A) identical to
           DREB2A GI:3738230 from [Arabidopsis thaliana] ;
           supported by cDNA:gi_3738229_dbj_AB007790.1_AB007790
          Length = 335

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = +3

Query: 393 KHW-ETFEKNLLYAVDVLKG---ENIQGLIEPINQYSMPKYFLSDYGRAVDIIK-RIDSP 557
           KHW   FE N  Y  D+LK    +  QG++E   Q       ++DYG   D+ +  +DS 
Sbjct: 199 KHWLSEFEHN--YWSDILKEKEKQKEQGIVETCQQQQQDSLSVADYGWPNDVDQSHLDSS 256

Query: 558 NL 563
           ++
Sbjct: 257 DM 258


>At4g11400.1 68417.m01838 ARID/BRIGHT DNA-binding domain-containing
           protein / ELM2 domain-containing protein / Myb-like
           DNA-binding domain-containing protein similar to
           BRG1-binding protein ELD/OSA1 [Homo sapiens]
           GI:18568414; contains Pfam profiles PF01388: ARID/BRIGHT
           DNA binding domain, PF01448: ELM2 domain, PF00249:
           Myb-like DNA-binding domain
          Length = 573

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = -2

Query: 163 KGKPDSTALNPASLAKAYRSKMEEASANIKDRLAQNFIIIKFNTISFLDCKRLT 2
           KG+PDS +   +   +  R  + E    +K  L  +F   +FN +    C R T
Sbjct: 423 KGRPDSCSCELSGFVECTRLHIAEKRMELKRELGDDFFHWRFNQMGEEVCLRWT 476


>At3g14620.1 68416.m01851 cytochrome P450, putative similar to
           GB:Q05047 from [Catharanthus roseus]
          Length = 515

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -1

Query: 128 VFSQSISFQNGRSFSKHKRQISTEFHYNKI 39
           +F+  ++   G  +SKH++ I+  FH  K+
Sbjct: 139 LFATGVALYEGEKWSKHRKIINPSFHLEKL 168


>At2g16860.1 68415.m01939 GCIP-interacting family protein similar to
           GCIP-interacting protein mp29 (GI:27372623) [Mus
           musculus]; similar to GCIP-interacting protein P29
           (GI:11967379) [Homo sapiens]
          Length = 298

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 378 ENPTPKHWETFEKNLLYAVDVLKGENIQGLIEPINQ 485
           + PTP  W+ F +  LY     + +NIQ  +E  N+
Sbjct: 169 KEPTPAGWDVFNQKTLYNAYKKRTKNIQVDLEEYNR 204


>At1g37130.1 68414.m04639 nitrate reductase 2 (NR2) identical to
           SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1)
           (NR2) {Arabidopsis thaliana}
          Length = 917

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
 Frame = +3

Query: 276 VPGKEDEFKTNLNTTIEYAKALDAKKIHIMAGKVENPTPKHWETFEKNLLYAVDVLKGEN 455
           VPG+ D  K + N T      L   K+H     V +      ET   N +Y  ++++  N
Sbjct: 28  VPGRSDSPKAHQNQTTNQTVFLKPAKVHDDDEDVSSEDEN--ETHNSNAVYYKEMIRKSN 85

Query: 456 IQ---GLIEPINQYS 491
            +    +++P ++Y+
Sbjct: 86  AELEPSVLDPRDEYT 100


>At5g65750.1 68418.m08274 2-oxoglutarate dehydrogenase E1 component,
           putative / oxoglutarate decarboxylase, putative /
           alpha-ketoglutaric dehydrogenase, putative similar to
           SP|P20967 2-oxoglutarate dehydrogenase E1 component,
           mitochondrial precursor (EC 1.2.4.2)
           (Alpha-ketoglutarate dehydrogenase) {Saccharomyces
           cerevisiae}; contains Pfam profiles PF02779:
           Transketolase, pyridine binding domain, PF00676:
           Dehydrogenase E1 component
          Length = 1025

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +3

Query: 324 EYAKALDAKKIHIMAGKVENPTPKHWETFEKNLLY 428
           EY    D  K + +  K+E PTP+ + +  + ++Y
Sbjct: 209 EYMHIADRDKCNWLRDKIETPTPRQYNSERRMVIY 243


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,933,744
Number of Sequences: 28952
Number of extensions: 258344
Number of successful extensions: 724
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)