Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g14r
         (745 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.0  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   9.2  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +3

Query: 591 TETGPTVATASISFCSSPSGMSTKPTSSAPV 683
           ++  P   +A +S   SP+G    P++ AP+
Sbjct: 387 SQVSPVSMSALVSAVRSPAGGQLPPSAGAPM 417


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +1

Query: 709  RQLPRRGRSAR 741
            + LPRRGRS+R
Sbjct: 1836 KSLPRRGRSSR 1846


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +1

Query: 709  RQLPRRGRSAR 741
            + LPRRGRS+R
Sbjct: 1832 KSLPRRGRSSR 1842


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 169 RSLTNLRTAIPQLAPDRGQGLGY 101
           +S + ++T  PQ++PDR   + Y
Sbjct: 404 QSQSTIQTLRPQVSPDRTSPMEY 426


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/41 (21%), Positives = 21/41 (51%)
 Frame = +2

Query: 401 LDVAQLAPRAAPRVLHEPVVHALLVGAVTHHQNPVVQVSGG 523
           LDV++L   +   +  +  ++   +G V H ++ +V+   G
Sbjct: 24  LDVSKLTALSREVISRQATINIGTIGHVAHGKSTIVKAISG 64


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,383
Number of Sequences: 438
Number of extensions: 3137
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)