Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g13r
         (419 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16793| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.68 
SB_31555| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 30   0.89 
SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11)               28   3.6  
SB_41867| Best HMM Match : F-box (HMM E-Value=4.5e-08)                 27   8.3  

>SB_16793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 462

 Score = 30.3 bits (65), Expect = 0.68
 Identities = 18/73 (24%), Positives = 31/73 (42%)
 Frame = +3

Query: 156 PRCAWFGHRNCEIVDMLSGSHSSVRTHIPPCLMQSSSLNGVCVSKGLLHTVTAISKTMTK 335
           P   +F H   E+   +  +   +   +  CL+ +  L  +CV KG+  +   +  T T 
Sbjct: 136 PSAYYFYHHALEVSTSIEDTGVGINVKLAGCLVFAWILTYLCVVKGIKSSGKVVYFTATF 195

Query: 336 THCISFIFNFLGV 374
            + I  I  F GV
Sbjct: 196 PYIILIILFFRGV 208


>SB_31555| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 1063

 Score = 29.9 bits (64), Expect = 0.89
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +3

Query: 261 SSLNGVCVSKGLLHTVTAISKTMTKTHCISFIF 359
           SS N  C+  G     T IS     THC+  IF
Sbjct: 736 SSNNNTCIRTGFFSKYTCISYIRLHTHCVVIIF 768


>SB_36215| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1427

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 144  QQATPRCAWFGHRNCEIVDMLSGSHSSVRTHIPPCLMQSSSL 269
            Q+  P C+    RN E    L  S S+++    PCL  S S+
Sbjct: 1182 QKVAPLCSGSAERNLEGSPRLQASDSTMKAEETPCLPHSGSI 1223


>SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11)
          Length = 1704

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 201  MLSGSHSSVRTHIPPCLMQSSSLN 272
            ++S S    R H PPC+ QSSSL+
Sbjct: 960  VVSSSDVPPRKHSPPCVSQSSSLS 983


>SB_41867| Best HMM Match : F-box (HMM E-Value=4.5e-08)
          Length = 607

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 202 ISTISQFLCPNQAHLGVACC 143
           I+T+S+F CPN  HL V  C
Sbjct: 267 IATVSEF-CPNLEHLNVRSC 285


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,853,221
Number of Sequences: 59808
Number of extensions: 258517
Number of successful extensions: 538
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)