Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g13r
         (419 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80216-6|CAB02285.2|  313|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical pr...    27   5.5  
Z49073-5|CAA88890.1| 1122|Caenorhabditis elegans Hypothetical pr...    26   9.5  

>Z80216-6|CAB02285.2|  313|Caenorhabditis elegans Hypothetical
           protein F10G8.6 protein.
          Length = 313

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -2

Query: 337 VFVIVLLMAVTVCSSPLLTQTP--FSEEDCIRQGGICVRTEECDPDNISTISQFLCPNQA 164
           + ++  L+        L+  TP   S  D  ++   CV+T+      +  +++F+CPN A
Sbjct: 185 ISLVQFLLQAGPLDGALIVSTPQEVSLLDVRKEVSFCVKTKVPILGVVENMARFVCPNCA 244

Query: 163 H 161
           H
Sbjct: 245 H 245


>Z19157-6|CAA79569.2| 1556|Caenorhabditis elegans Hypothetical protein
            ZC84.1 protein.
          Length = 1556

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 244  GGICVRTEECDPDNISTISQFLCPNQAHLGVACCYV 137
            GG C    +C  + +  +   LC N+A LG AC  V
Sbjct: 1211 GGFCQEEIQCSSNQV--LHNGLCHNKAKLGEACLTV 1244


>Z49073-5|CAA88890.1| 1122|Caenorhabditis elegans Hypothetical protein
            ZK970.6 protein.
          Length = 1122

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = +3

Query: 192  IVDMLSGSHSSVRTHIPPCLMQSSSLNGVCVSKGLLHTVTAISKTMTKTHCIS 350
            ++ M   +HS +  H P     SS    +   KG++ T   + KT + T  +S
Sbjct: 1025 MIHMSEAAHSLLTDHYPHQYETSSRGEVIIKGKGVMETFWVLGKTDSDTKSLS 1077


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,566,491
Number of Sequences: 27780
Number of extensions: 192079
Number of successful extensions: 424
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)