Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g13r
         (419 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73080.1 68414.m08450 leucine-rich repeat transmembrane prote...    28   2.2  
At5g58270.1 68418.m07295 mitochondrial half-ABC transporter (STA...    28   3.0  
At4g28630.1 68417.m04093 ABC transporter family protein identica...    28   3.0  
At4g22210.1 68417.m03210 hypothetical protein                          27   5.2  
At3g28040.1 68416.m03500 leucine-rich repeat transmembrane prote...    27   6.8  
At4g28620.1 68417.m04092 ABC transporter family protein identica...    26   9.0  

>At1g73080.1 68414.m08450 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor protein kinase
           GI:1389566 from [Arabidopsis thaliana]
          Length = 1123

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +3

Query: 171 FGHRNCEIVDMLSGSHSSVRTHIPPCLMQSSSLNGVCVSKGLLHTVTAISKTMTK 335
           FG  NC+ +  L  S++     +PP L   SSL+ + +  G L      S  M K
Sbjct: 261 FGSPNCKNLLTLDLSYNEFEGGVPPALGNCSSLDALVIVSGNLSGTIPSSLGMLK 315


>At5g58270.1 68418.m07295 mitochondrial half-ABC transporter (STA1)
           identical to half-molecule ABC transporter ATM3
           GI:9964121 from [Arabidopsis thaliana]; almost identical
           to mitochondrial half-ABC transporter STA1 GI:9187883
           from [Arabidopsis thaliana]; identical to cDNA
           mitochondrial half-ABC transporter (STA1 gene)GI:9187882
          Length = 728

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 282 HKHHSVRRIASDKEVYACARRNVIQTTYRRFRNFY 178
           H  H  R  A+++EVY  ARR  I  T   F + Y
Sbjct: 571 HNIHYGRLSATEEEVYEAARRAAIHETISNFPDKY 605


>At4g28630.1 68417.m04093 ABC transporter family protein identical
           to half-molecule ABC transporter ATM1 GI:9964117 from
           [Arabidopsis thaliana]
          Length = 678

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 282 HKHHSVRRIASDKEVYACARRNVIQTTYRRFRNFY 178
           H  H     A+++EVY  ARR VI  T  +F + Y
Sbjct: 529 HNIHYGNLSATEEEVYDAARRAVIHDTIMKFPDKY 563


>At4g22210.1 68417.m03210 hypothetical protein
          Length = 86

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 21/75 (28%), Positives = 27/75 (36%), Gaps = 3/75 (4%)
 Frame = -2

Query: 331 VIVLLMAVTVCSSPLLTQTPFSEEDCIRQGGICVRTEECDPDNISTISQFL---CPNQAH 161
           V    +AV VC S LL         C    G+C     C+    S    F    C +   
Sbjct: 6   VSTFAVAVVVCLSILLMSPTDGRRVCDSAAGLCSMLFSCNTQCNSLGRNFTGGECSDARF 65

Query: 160 LGVACCYV*RNSVSS 116
            G++ CY   N  SS
Sbjct: 66  PGLSVCYCCHNVESS 80


>At3g28040.1 68416.m03500 leucine-rich repeat transmembrane protein
           kinase, putative contains Pfam profiles: PF00560 leucine
           rich repeat, PF00069 eukaryotic protein kinase domain
          Length = 1016

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 183 NCEIVDMLSGSHSSVRTHIPPCLMQSSSLNGVCVSK 290
           NC  +  LS SH+ +   IP  L + S LN + +S+
Sbjct: 171 NCSSLRYLSLSHNHLEGQIPSTLFRCSVLNSLNLSR 206


>At4g28620.1 68417.m04092 ABC transporter family protein identical
           to half-molecule ABC transporter ATM2 GI:9964119 from
           [Arabidopsis thaliana]
          Length = 680

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 282 HKHHSVRRIASDKEVYACARRNVIQTTYRRFRNFY 178
           H  H     A+++EVY  ARR  I  T  +F + Y
Sbjct: 531 HNIHYGNLSATEEEVYNAARRAAIHDTIMKFPDKY 565


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,750,816
Number of Sequences: 28952
Number of extensions: 168826
Number of successful extensions: 405
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)