Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g13f
         (476 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0414 + 13650483-13651388,13651559-13651657                       28   3.4  
04_01_0600 + 7907142-7908047,7908218-7908316                           28   3.4  
04_01_0595 + 7840842-7841345,7841518-7841748,7841919-7842017           28   3.4  
02_02_0037 - 6260171-6260382,6260657-6260723                           28   3.4  

>05_03_0414 + 13650483-13651388,13651559-13651657
          Length = 334

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +2

Query: 140 QTPFSEEDCIRQGGICVRTEECDPDNISTISQFLCPNQAHLGVAC 274
           + P ++   +R  G+ ++   CD + +  ++QFL P  A + + C
Sbjct: 2   ELPVADPGPVRAEGLLLQCPYCDSEAMHKLAQFLLPGLAAVCIDC 46


>04_01_0600 + 7907142-7908047,7908218-7908316
          Length = 334

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +2

Query: 140 QTPFSEEDCIRQGGICVRTEECDPDNISTISQFLCPNQAHLGVAC 274
           + P ++   +R  G+ ++   CD + +  ++QFL P  A + + C
Sbjct: 2   ELPVADPGPVRAEGLLLQCPYCDSEAMHKLAQFLLPGLAAVCIDC 46


>04_01_0595 + 7840842-7841345,7841518-7841748,7841919-7842017
          Length = 277

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +2

Query: 140 QTPFSEEDCIRQGGICVRTEECDPDNISTISQFLCPNQAHLGVAC 274
           + P ++   +R  G+ ++   CD + +  ++QFL P  A + + C
Sbjct: 2   ELPVADPGPVRAEGLLLQCPYCDSEAMHKLAQFLLPGLAAVCIDC 46


>02_02_0037 - 6260171-6260382,6260657-6260723
          Length = 92

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = +2

Query: 62  KMKLIQCVFVIVLLMAVTVCSSPLLTQTPFSEEDCIRQGGICVRTEECD 208
           K+     V V++L++A  +    ++ Q    E+      G+C+R++ CD
Sbjct: 6   KLSSSAVVLVLLLVVATEMTGMVVVVQARLCEKPSSHFKGLCLRSQNCD 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,988,088
Number of Sequences: 37544
Number of extensions: 210674
Number of successful extensions: 455
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)