Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g12f
         (446 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    27   1.7  
SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase |Schizosac...    25   4.0  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   7.0  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   7.0  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    24   9.3  

>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 424 GGRAHSPPGVKWLLEPIDIYN 362
           GG  H P  V WLL P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPBC1718.04 |||glycerol-3-phosphate O-acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.4 bits (53), Expect = 4.0
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 240 YHHPAYFRHEAVMRFGS 290
           Y HP  FR  AV+ FGS
Sbjct: 249 YFHPHRFRSRAVLEFGS 265


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +1

Query: 166 KNQTRKIIICVITGGRT 216
           K+  +K+++C+I+ GRT
Sbjct: 229 KDAWKKVVVCIISDGRT 245


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 415 AHSPPGVKWLLEPIDIYNVNAPPTLR 338
           A  PP +K    P+DI N++A   L+
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLK 249


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 61   TGVRIPQAGTNFSNEIRTQQMF 126
            T   IP+A  +F+N+I TQ  F
Sbjct: 1302 TSSDIPKANIDFTNDISTQNTF 1323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,982,249
Number of Sequences: 5004
Number of extensions: 39603
Number of successful extensions: 70
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)