Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g12f
         (446 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0654 - 4900509-4900518,4900626-4900709,4900844-4901377,490...    30   0.74 
08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250...    30   0.97 
07_01_1108 - 10250435-10250654,10251948-10252054,10252204-102524...    29   1.7  
08_01_0684 + 6009474-6009582,6009715-6009904,6011412-6011483,601...    27   9.1  
07_03_0664 + 20462600-20463005,20464270-20464343                       27   9.1  

>07_01_0654 -
           4900509-4900518,4900626-4900709,4900844-4901377,
           4901462-4901619,4901703-4901832,4901918-4901999,
           4902097-4902230,4902314-4902410,4902512-4902788,
           4902881-4903024
          Length = 549

 Score = 30.3 bits (65), Expect = 0.74
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +1

Query: 82  AGTNFSNEIRTQQMFTVDFHGEGITSC-NKNQTRKIIICVITGGRTSWESARVGTTTPPI 258
           +GT+   +    ++  VD  G GIT+C  +N+ +K    ++ G      + RV   T  +
Sbjct: 29  SGTSKRRDFTALELILVDEEGVGITACVGENEIQKFSTSIVEGHAYFLRNFRVSRQTKKL 88

Query: 259 SAM 267
           +A+
Sbjct: 89  NAV 91


>08_01_0304 -
           2502760-2502774,2502844-2502921,2503035-2503103,
           2503200-2503289,2503400-2503517,2505548-2505678,
           2505756-2506025,2507175-2507308,2507635-2508088
          Length = 452

 Score = 29.9 bits (64), Expect = 0.97
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = +1

Query: 55  RCTGVRIPQAGTNFSNEIRTQQMFTVDFHGE 147
           RCTGV I   G N   +I T      DFHGE
Sbjct: 159 RCTGVVIGWDGANKRAKILTAASVVCDFHGE 189


>07_01_1108 -
           10250435-10250654,10251948-10252054,10252204-10252404,
           10252480-10252830,10252876-10252890
          Length = 297

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 308 NGYPILRTETHYCFMAEIGGVVVPTRADSQEVLPPVITQI 189
           NGYP+ + E +  FM   G +   T  +  E  PP+  Q+
Sbjct: 210 NGYPLSKDELYDFFMRHYGDIEDITIEEPPEPRPPLFAQV 249


>08_01_0684 +
           6009474-6009582,6009715-6009904,6011412-6011483,
           6011644-6011715,6011806-6011877,6012163-6012234,
           6012283-6012354,6012479-6012550,6012634-6012705,
           6013112-6013183,6013275-6013349,6013453-6013524,
           6013619-6013684,6013752-6013777,6014179-6014558,
           6014642-6014840,6014910-6015068,6015569-6015613,
           6015742-6015973,6016053-6016203,6016306-6016665
          Length = 879

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 205 GGRTSWESARVGTTTPPISAMKQ 273
           GG TS+ ++  G+TTP +S  K+
Sbjct: 837 GGNTSYVTSHSGSTTPKLSRQKE 859


>07_03_0664 + 20462600-20463005,20464270-20464343
          Length = 159

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +1

Query: 118 QMFTVDFHGEGITSCNKNQTRKIIICVITGGRTSWESARV 237
           Q +  + H     SC +N T ++I  +    R SW S  +
Sbjct: 47  QCYCFETHRRWRCSCYENTTSRLISMLAAAARPSWRSGSI 86


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,712,869
Number of Sequences: 37544
Number of extensions: 282796
Number of successful extensions: 541
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)