Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g12f
         (446 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73098-8|CAA97334.2|  303|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z66567-1|CAA91491.1|  887|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin rec...    27   6.2  
U29488-12|AAA68769.3|  617|Caenorhabditis elegans Hypothetical p...    27   6.2  
U00043-4|AAN65291.1| 1076|Caenorhabditis elegans Hypothetical pr...    27   6.2  
AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-l...    27   6.2  
AC199172-2|ABO33275.1|  305|Caenorhabditis elegans F-box a prote...    27   6.2  
AC006729-6|AAF60464.1|  282|Caenorhabditis elegans Hypothetical ...    27   8.2  

>Z73098-8|CAA97334.2|  303|Caenorhabditis elegans Hypothetical
           protein T21C9.7 protein.
          Length = 303

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -1

Query: 302 YPILRTETHYCFMAEIGGVVVPTRADSQEVLPPVITQIII 183
           +PI     ++ +   +GG    T A+S EVL  ++T +I+
Sbjct: 148 WPIATNNAYFIYSPTLGGFATKTVANSTEVLNSLVTFMIV 187


>Z66567-1|CAA91491.1|  887|Caenorhabditis elegans Hypothetical
           protein ZK455.1 protein.
          Length = 887

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = -3

Query: 183 FAGLIFITRCYSFTVEVNREHLLSTYFIRKIGTRLRDSNTGASLHTNAPD 34
           F  L+ +        +VN E+L  T F+ K G    DS  G   HT   D
Sbjct: 162 FDNLLIVPPGSGIVHQVNLEYLARTVFVGKDGVLYPDSVVGTDSHTTMID 211


>U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin
           receptor protein 2 protein.
          Length = 1338

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -3

Query: 180 AGLI-FITRCYSFTVEVNREHLLSTYFIRKIGTRLRDSNTGASLHTNAPDVL 28
           +GLI F +RCYS T+E N +   +         +   S +G S+ T+ PD L
Sbjct: 332 SGLIQFDSRCYSMTIETNEKKQRTME-----DAQTYCSQSGGSIITSPPDAL 378


>U29488-12|AAA68769.3|  617|Caenorhabditis elegans Hypothetical
           protein C56C10.1 protein.
          Length = 617

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 169 NQTRKIIICVITGGRTSWESA 231
           N+TRK I+  + GG T WE A
Sbjct: 557 NRTRKAIMVFVNGGITYWEVA 577


>U00043-4|AAN65291.1| 1076|Caenorhabditis elegans Hypothetical
           protein T26A5.5a protein.
          Length = 1076

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = -2

Query: 373 DIYNVNAPPTLRYKF*GLSIVTTATPSFEPKRITASWRK*AGWWYLPVRTPKRSYHQ 203
           D Y+   PPT R K+  +S+ T  TPS    +    +R           TP  S+HQ
Sbjct: 828 DHYDGQKPPTKRAKYEAISVDTYETPSSSRNKEHKEYRPSPN----AAPTPSPSHHQ 880


>AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-like
           protein LAT-2 protein.
          Length = 1338

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -3

Query: 180 AGLI-FITRCYSFTVEVNREHLLSTYFIRKIGTRLRDSNTGASLHTNAPDVL 28
           +GLI F +RCYS T+E N +   +         +   S +G S+ T+ PD L
Sbjct: 332 SGLIQFDSRCYSMTIETNEKKQRTME-----DAQTYCSQSGGSIITSPPDAL 378


>AC199172-2|ABO33275.1|  305|Caenorhabditis elegans F-box a protein
           protein 32 protein.
          Length = 305

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +1

Query: 40  CIRV*RCTGVRIPQAGTNFSN-EIRT-QQMFTVDFHGEGITSCNK 168
           C +V R     I + GT+F+   IR      +VDF G GI  CN+
Sbjct: 31  CRKVCRSLRTAIDKLGTHFNKISIRLWDNSVSVDFDGIGINYCNE 75


>AC006729-6|AAF60464.1|  282|Caenorhabditis elegans Hypothetical
           protein Y24D9A.5 protein.
          Length = 282

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = +3

Query: 225 VRTGRYHHPAYFRHEAVMRFGSKDGVAVVTILRP*NLYLKVGGAFTL*MSMGSSNHLTP 401
           VRT R+HH A   H  V  FG    V+ V++    +L L +  + +L + + S + L P
Sbjct: 61  VRTHRHHHRAVAAHNTVPSFGRGFCVSPVSL----SLSLSLSLSLSLDLFLSSFSPLFP 115


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,181,509
Number of Sequences: 27780
Number of extensions: 232470
Number of successful extensions: 470
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)