Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g12f
         (446 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g14570.2 68418.m01709 transporter, putative similar to trans-...    27   5.8  
At5g14570.1 68418.m01708 transporter, putative similar to trans-...    27   5.8  
At4g38640.1 68417.m05469 choline transporter-related contains we...    27   7.6  
At2g37720.1 68415.m04625 expressed protein                             27   7.6  

>At5g14570.2 68418.m01709 transporter, putative similar to
           trans-membrane nitrate transporter protein AtNRT2:1
           [Arabidopsis thaliana] GI:3747058, high-affinity nitrate
           transporter ACH1 [Arabidopsis thaliana] GI:3608362;
           contains Pfam profile PF00083: Sugar (and other)
           transporter
          Length = 397

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = -3

Query: 192 NYNFAGLIFITRCYSFTVEVNREHLLSTYFIRKIGTRLRDSNTGAS 55
           NY  A ++ +   YS+ VE+  +++++ YF  + G  L  + T A+
Sbjct: 267 NYR-AWILALLYGYSYGVELTTDNVIAGYFYERFGVNLEAAGTIAA 311


>At5g14570.1 68418.m01708 transporter, putative similar to
           trans-membrane nitrate transporter protein AtNRT2:1
           [Arabidopsis thaliana] GI:3747058, high-affinity nitrate
           transporter ACH1 [Arabidopsis thaliana] GI:3608362;
           contains Pfam profile PF00083: Sugar (and other)
           transporter
          Length = 493

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = -3

Query: 192 NYNFAGLIFITRCYSFTVEVNREHLLSTYFIRKIGTRLRDSNTGAS 55
           NY  A ++ +   YS+ VE+  +++++ YF  + G  L  + T A+
Sbjct: 267 NYR-AWILALLYGYSYGVELTTDNVIAGYFYERFGVNLEAAGTIAA 311


>At4g38640.1 68417.m05469 choline transporter-related contains weak
           similarity to CD92 protein [Homo sapiens]
           gi|16945323|emb|CAC82175
          Length = 556

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
 Frame = -3

Query: 201 DYAN---YNFAGLIFITRCYS--FTVEVNREHLLSTYFIRKIGTRL 79
           DY N    NFA +     C S   T E+ R +LLS  F+  + TR+
Sbjct: 410 DYLNKFTINFAAITGEAYCTSAKMTYELLRRNLLSAVFVETVSTRI 455


>At2g37720.1 68415.m04625 expressed protein 
          Length = 482

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 20/60 (33%), Positives = 31/60 (51%)
 Frame = +1

Query: 64  GVRIPQAGTNFSNEIRTQQMFTVDFHGEGITSCNKNQTRKIIICVITGGRTSWESARVGT 243
           G  IP+   N  N +R  Q  T+ F G+   S  + Q + ++ C+ TGG+ S E   VG+
Sbjct: 193 GCNIPEF--NRVNFLRRMQNKTIAFIGD---SLGREQFQSLM-CMATGGKESPEVQNVGS 246


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,577,311
Number of Sequences: 28952
Number of extensions: 218253
Number of successful extensions: 386
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 722638680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)