Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g11r
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    36   0.005
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    29   0.91 
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   2.1  
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa...    27   3.7  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   4.8  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   4.8  
SPAC26H5.09c |||GFO/IDH/MocA family oxidoreductase|Schizosacchar...    26   4.8  
SPCC1795.03 |gms1||UDP-galactose transporter Gms1|Schizosaccharo...    26   6.4  
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ...    26   6.4  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    25   8.5  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    25   8.5  
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ...    25   8.5  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    25   8.5  

>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 36.3 bits (80), Expect = 0.005
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -2

Query: 593 VYIPDRRRQTLADTSYVPQQENEV--YYPQQPENPIFSPTQATELADP 456
           VY+PD          Y+P+    V  YYPQQP  P+F  ++ TEL DP
Sbjct: 497 VYVPDAT-DAAKPQYYIPKDPYPVPHYYPQQPL-PLFDSSEMTELVDP 542


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 18/59 (30%), Positives = 23/59 (38%)
 Frame = -3

Query: 268 SHHPECPHPRSSQCSSDGEVGPQVVPEARPQLPTHTAQVEEASPQATPPPTVDPDRMKN 92
           SHHP   +P    C       P + P   PQ+P+H   V   SP     P   P  + N
Sbjct: 136 SHHPPLHNPLPVSCQ------PVLRPPPVPQVPSHWYPVSLPSPNLPHQPISKPPVIPN 188


>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +3

Query: 153 TCAVCVGNCGRASGTTCGPTSPSEEHWE 236
           TCA+C+  C +     C   S  E  +E
Sbjct: 83  TCAICIRQCHKCESNVCSMCSKQERTFE 110


>SPAC1805.05 |cki3||serine/threonine protein kinase
           Cki3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 439

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
 Frame = -3

Query: 220 DGEVGPQVVPEARPQLPTHTAQ------VEEASPQATPPPTVDPDRMKNCKP 83
           DG  G    P+ + Q  T +AQ      VE+ +PQ T P  VD  +     P
Sbjct: 366 DGIPGKAASPQVQQQQQTSSAQQQQPQRVEQPAPQTTQPTQVDTQQAAKPAP 417


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -3

Query: 628 SPKPHRRLQRARCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSS 488
           S   H    +    + +++   +P+P  YR    +  TLSN++T  S
Sbjct: 45  SQDTHSCASKQDAVFQLLSETKIPVPNRYRKISHRLSTLSNKKTLKS 91


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 387 SGRRFGSLGNRYQSGGVQFDLFSGVSQFGR 476
           +G  FG+  N   +GG  F + SG   FG+
Sbjct: 64  NGGLFGNRNNTTTTGGTGFGMSSGTGMFGQ 93


>SPAC26H5.09c |||GFO/IDH/MocA family
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 369

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 662 VGGGMAAFMYRQPEAAQAPSTGQVYIPDRRRQTLADT 552
           +G GM+AF++  P     P+  +VY    RR T  ++
Sbjct: 9   LGTGMSAFIFHYPFLKALPNHFEVYAAWERRATSTES 45


>SPCC1795.03 |gms1||UDP-galactose transporter
           Gms1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 353

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 647 AAFMYRQPEAAQAPSTGQVYIP 582
           A F+Y +PE+  +PS G  YIP
Sbjct: 318 ATFLYTKPESKPSPSRG-TYIP 338


>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 176 LRSGLRDHLRPYLPIRRTLGRTRMWALWVVRS 271
           LR+  +  L  +LP RRT G  ++WA + V +
Sbjct: 838 LRNFKQGSLVLFLPTRRTAGNKKVWAAFNVNA 869


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -2

Query: 554 TSYVPQQENEVYYPQQPENPIFSPTQATELADPTEKIELYSTT 426
           TS+ PQ ++ +Y     +  + S T+  +  + T K++  S T
Sbjct: 720 TSFNPQHDSRIYNHNGKQKLVISFTETMDCNEITSKLQFSSKT 762


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -3

Query: 697 AVTTILTTTPELWAVVWPRS 638
           A T IL TTPE W VV  +S
Sbjct: 386 AETQILVTTPEKWDVVTRKS 405


>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 454

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 627 LAVHERGHTTAHSSGVVVRIVVTAHDQASSVTIA 728
           L  H+R  +  H+S  +V I+V +HD AS+   A
Sbjct: 254 LGGHKRLSSRNHNSQPLVCILVGSHDHASAAVAA 287


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = -2

Query: 536 QENEVYYPQQPENPIFSPTQATELADPTE 450
           + N   YPQ  + P+  P  A    DP +
Sbjct: 155 EHNGPVYPQDQQGPVIIPNSAISSTDPDD 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,724,454
Number of Sequences: 5004
Number of extensions: 55012
Number of successful extensions: 186
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)