Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10g11r
(735 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23) 32 0.42
SB_34512| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.97
SB_29099| Best HMM Match : DUF1333 (HMM E-Value=0.67) 31 0.97
SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34) 30 1.7
SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064) 29 3.9
SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046) 29 3.9
SB_2243| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09) 28 6.8
SB_31799| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_15409| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_40118| Best HMM Match : DREPP (HMM E-Value=0.085) 28 6.8
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_19793| Best HMM Match : TSP_1 (HMM E-Value=0.0027) 28 9.0
>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
Length = 2123
Score = 32.3 bits (70), Expect = 0.42
Identities = 25/84 (29%), Positives = 32/84 (38%), Gaps = 1/84 (1%)
Frame = -3
Query: 718 TEEAWS*AVTTILTTTPELWAVVWPRSCTA-SPKPHRRLQRARCTYLIVAARPLPIPATY 542
T E + TT TTTPE PR+ T + KP + AA+ P+P T+
Sbjct: 1781 TPETTAPRTTTPETTTPE---TTTPRTTTPETTKPRTTTPKTTTPKKTTAAKKAPLPVTH 1837
Query: 541 RNKKTKSITLSNQRTRSSAPLKRP 470
T N T A K P
Sbjct: 1838 ATTSHAPSTTENPTTARPATTKAP 1861
>SB_34512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1080
Score = 31.1 bits (67), Expect = 0.97
Identities = 26/61 (42%), Positives = 33/61 (54%)
Frame = -2
Query: 629 QPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYPQQPENPIFSPTQATELADPTE 450
Q E A A S V +P+R QT + S P+Q N+V PQ E P S T A LA+P E
Sbjct: 625 QHELAVADSP-VVCLPER--QTHSGESATPEQTNQVVEPQM-EEPQGS-TSAQHLAEPDE 679
Query: 449 K 447
+
Sbjct: 680 Q 680
>SB_29099| Best HMM Match : DUF1333 (HMM E-Value=0.67)
Length = 237
Score = 31.1 bits (67), Expect = 0.97
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -3
Query: 208 GPQVVPEARPQLPTHTAQVEEASPQATPPPTVDPDRMKNC 89
GP+++P++ P P EE SP++TP TV R C
Sbjct: 197 GPEMIPKSTPTDPRTRNDTEE-SPKSTPGITVMESRRNTC 235
>SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)
Length = 1790
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +3
Query: 123 GGVACGDASSTCAVCVGNCGRASGTTCGPTSPSEEHWEE 239
G CG +C+ C G CG ++G C P ++ E
Sbjct: 97 GRYYCGRQVLSCSCCDGFCGTSNGCNCPPCQKLDQEERE 135
>SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064)
Length = 1230
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = -3
Query: 259 PECPHPRSSQCSSDGEVGPQVVPEARPQLPTHTAQVEEASPQATPPPTVDPDRMKNCKP 83
PE +SQ + + P P ARPQ P ++ SP P PT+ +++ P
Sbjct: 864 PEPASQMNSQFNDQPNLAPYE-PFARPQQPPAPMPPQQQSPYQPPAPTMQQPQLQAFAP 921
>SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)
Length = 797
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -3
Query: 250 PHPRSSQCSS-DGEVGPQVVPEARPQLPTHTAQVEEASPQATPPPTVDPDRM 98
P S C+ P+V+ R LPT+T+ E SP+ TP PT R+
Sbjct: 469 PREHQSPCTPVPAYTTPRVLHSPRTPLPTYTSPREHHSPR-TPLPTYTSPRV 519
>SB_2243| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 28.7 bits (61), Expect = 5.2
Identities = 21/56 (37%), Positives = 25/56 (44%)
Frame = +3
Query: 546 VAGIGKGLAATIRYVHLAR*RRLCGFGLAVHERGHTTAHSSGVVVRIVVTAHDQAS 713
VAG+ T Y H AR R G+G A RG T H GV R T + A+
Sbjct: 12 VAGVWTRSTVT-GYRHAARSR---GYGHAARSRGIDTQHGHGVWTRSTFTGYRHAA 63
>SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)
Length = 1084
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -3
Query: 265 HHPECPHPRSSQCSSDGEVGPQVVPEAR--PQLPTH 164
+HP CP P +C E+ P+++PE + Q+P H
Sbjct: 319 NHP-CPLPCFEECKPCTELLPKIIPECQHEQQVPCH 353
>SB_31799| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 960
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Frame = -3
Query: 664 LWAVVWPRSCTASPKPHRRLQRARCTYLIV--AARPLPIPATYRN 536
+W + W S P+ HRR + R + + P P T +N
Sbjct: 703 VWTLAWTVSTPLIPQEHRRTEHRRTVWTLAWYGVHPTHTPGTQKN 747
>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1468
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -3
Query: 193 PEARPQLPTHTAQVEEASPQATPPPTVDPDRMK 95
P+ + P T + PQ TP PT +P R K
Sbjct: 357 PKHTTEPPRTTPEPTTEPPQTTPEPTTEPSRTK 389
>SB_15409| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 419
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = +3
Query: 99 IRSGSTVGGGVA-CGDASSTCAVCVGNCGRASGTTCGPTSPSEEHWEERGCGHSG 260
++ T G G CG TC G CG+ G TCG + +GCG G
Sbjct: 223 VKGCGTCGKGCGTCGKRCRTCYAGCGTCGKGWG-TCGKGCRT----SGKGCGTCG 272
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = +3
Query: 114 TVGGGVA-CGDASSTCAVCVGNCGRASGTTCG 206
T G G CG TC G CG+ G TCG
Sbjct: 263 TSGKGCGTCGKGCGTCGKGCGTCGKGCG-TCG 293
>SB_40118| Best HMM Match : DREPP (HMM E-Value=0.085)
Length = 512
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -3
Query: 271 TSHHPECPHPRSSQCSSDGEVGPQVVPEARPQL 173
TS HP+ PHPRS GE P V +A ++
Sbjct: 287 TSSHPQ-PHPRSRSFDYSGEGRPSVGSDASGEI 318
>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2202
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/54 (27%), Positives = 19/54 (35%)
Frame = +3
Query: 108 GSTVGGGVACGDASSTCAVCVGNCGRASGTTCGPTSPSEEHWEERGCGHSGWCE 269
G G G G+ ++ G SGTT G + E G SG E
Sbjct: 616 GVNTGSGTTTGEVNTGSGTTTGGMNTGSGTTTGGVNTGSGTTSESGTTTSGTTE 669
>SB_19793| Best HMM Match : TSP_1 (HMM E-Value=0.0027)
Length = 384
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Frame = +3
Query: 129 VACGDASSTCAVCVGNCGR---ASGTTCGPTSPSEEHWEERGCGHSGWC 266
+ G C+V GNCG G++C T + CGH WC
Sbjct: 59 IVYGQEYKLCSVTTGNCGTLFCMRGSSCVNTR-GMPPVDGTPCGHRKWC 106
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,707,616
Number of Sequences: 59808
Number of extensions: 479949
Number of successful extensions: 1724
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1713
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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