Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10g11r
(735 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro... 34 0.11
At2g28440.1 68415.m03455 proline-rich family protein contains pr... 33 0.20
At3g09000.1 68416.m01053 proline-rich family protein 31 0.60
At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetica... 30 1.8
At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetica... 30 1.8
At5g66060.1 68418.m08323 oxidoreductase, 2OG-Fe(II) oxygenase fa... 29 2.4
At5g16220.1 68418.m01895 octicosapeptide/Phox/Bem1p (PB1) domain... 29 2.4
At4g37900.1 68417.m05360 glycine-rich protein 29 3.2
At1g20270.1 68414.m02531 oxidoreductase, 2OG-Fe(II) oxygenase fa... 29 3.2
At1g18830.1 68414.m02345 transducin family protein / WD-40 repea... 29 3.2
At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99... 29 4.2
At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99... 29 4.2
At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99... 29 4.2
At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99... 29 4.2
At4g18400.1 68417.m02731 expressed protein 29 4.2
At5g43770.1 68418.m05353 proline-rich family protein contains pr... 28 5.6
At3g57170.1 68416.m06365 N-acetylglucosaminyl transferase compon... 28 5.6
At5g18510.1 68418.m02185 hypothetical protein 27 9.8
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 27 9.8
>At5g58160.1 68418.m07280 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|Q05858 Formin (Limb deformity protein) {Gallus
gallus}; contains Pfam profile PF02181: Formin Homology
2(FH2) Domain
Length = 1307
Score = 33.9 bits (74), Expect = 0.11
Identities = 21/59 (35%), Positives = 28/59 (47%)
Frame = -3
Query: 259 PECPHPRSSQCSSDGEVGPQVVPEARPQLPTHTAQVEEASPQATPPPTVDPDRMKNCKP 83
P P P+S+ S+ P P A P+LPTH+A P A PPP + R + P
Sbjct: 737 PAPPTPQSNGISAMKSSPP--APPAPPRLPTHSA--SPPPPTAPPPPPLGQTRAPSAPP 791
>At2g28440.1 68415.m03455 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains similarity to vegetative cell wall protein gp1
[Chlamydomonas reinhardtii] gi|12018147|gb|AAG45420; +
Length = 268
Score = 33.1 bits (72), Expect = 0.20
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -3
Query: 271 TSHHPECPHPRSSQCSSDGEVGPQVVPEAR-PQLPTHTAQVEEASPQATPPP 119
+S + P P SS +D + P PEA PQ P + + E + +PPP
Sbjct: 97 SSPEVDSPQPPSSSPEADSPLPPSSSPEANSPQSPASSPKPESLADSPSPPP 148
>At3g09000.1 68416.m01053 proline-rich family protein
Length = 541
Score = 31.5 bits (68), Expect = 0.60
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = -3
Query: 259 PECPHPRSSQCSSDGEVGPQVVPEARPQLPTHTAQVEEASPQ--ATPPPTVD 110
P +PR S SS V P RP PT + V +P +P PTV+
Sbjct: 222 PTRSNPRPSSASSKKPVSRPATPTRRPSTPTGPSIVSSKAPSRGTSPSPTVN 273
>At3g63460.2 68416.m07146 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1102
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = -3
Query: 211 VGPQVVPEARPQLPTHTAQVEEASPQATPPPTV 113
V P+ V A P PT A + A ATPPPTV
Sbjct: 953 VAPRSVQPASP--PTQQAAAQAAPAPATPPPTV 983
>At3g63460.1 68416.m07145 WD-40 repeat family protein hypothetical
protein contains similarity to ec31p [Oryza sativa]
gi|13928450|dbj|BAB47154; contains Pfam profile PF00400:
WD domain, G-beta repeat
Length = 1104
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/33 (48%), Positives = 18/33 (54%)
Frame = -3
Query: 211 VGPQVVPEARPQLPTHTAQVEEASPQATPPPTV 113
V P+ V A P PT A + A ATPPPTV
Sbjct: 955 VAPRSVQPASP--PTQQAAAQAAPAPATPPPTV 985
>At5g66060.1 68418.m08323 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to prolyl 4-hydroxylase, alpha
subunit, from Rattus norvegicus [GI:474940], Mus
musculus [SP|Q60715], Homo sapiens [GI:18073925];
contains PF03171 2OG-Fe(II) oxygenase superfamily domain
Length = 267
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -3
Query: 616 HRRLQRARCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSSAPLKR 473
H L + C YLI A+P +T ++KT T S RT S L R
Sbjct: 91 HNFLTKEECKYLIELAKPHMEKSTVVDEKTGKSTDSRVRTSSGTFLAR 138
>At5g16220.1 68418.m01895 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein hypothetical proteins -
Arabidopsis thaliana contains Pfam profile PF00564: PB1
domain
Length = 476
Score = 29.5 bits (63), Expect = 2.4
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = -2
Query: 653 GMAAFMYR-QPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYPQQPE-NPIF 489
G FM + Q + Q TGQ YI TL T+Y N VYY + P+ PI+
Sbjct: 317 GYPPFMNQAQQQHIQVIYTGQPYITGNSPMTLPATAY--HHTNHVYYQRPPQPYPIY 371
>At4g37900.1 68417.m05360 glycine-rich protein
Length = 787
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +3
Query: 123 GGVACGDASSTCAVCVGNCGRASGTTCGPTSPSEEH 230
GG +C S+ C C G CG +PS E+
Sbjct: 747 GGGSCTGGSTGCGNCGGGCGNMMKNNANGNAPSVEN 782
>At1g20270.1 68414.m02531 oxidoreductase, 2OG-Fe(II) oxygenase
family protein similar to prolyl 4-hydroxylase, alpha
subunit, from Gallus gallus [GI:212530], Rattus
norvegicus [GI:474940], Mus musculus [SP|Q60715];
contains PF03171 2OG-Fe(II) oxygenase superfamily domain
Length = 287
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 616 HRRLQRARCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSSAPLKR 473
H L + C YLI A+P + +T + +T S RT S L+R
Sbjct: 89 HNFLSKEECEYLISLAKPHMVKSTVVDSETGKSKDSRVRTSSGTFLRR 136
>At1g18830.1 68414.m02345 transducin family protein / WD-40 repeat
family protein similar to Sec31p (GI:13928450) {Oryza
sativa}
Length = 969
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/32 (53%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -3
Query: 205 PQVV-PEARPQLPTHTAQVEEASPQATPPPTV 113
PQ V P RP PTH V + P A PPPTV
Sbjct: 819 PQTVAPPVRPMTPTHQVAV-QPEPVA-PPPTV 848
>At5g14420.4 68418.m01687 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/45 (28%), Positives = 17/45 (37%)
Frame = -3
Query: 250 PHPRSSQCSSDGEVGPQVVPEARPQLPTHTAQVEEASPQATPPPT 116
P P SS P +P +P +P H + PPPT
Sbjct: 372 PPPMRGGSSSYNSPKPSRLPSFKPSVPPHPTEGYHVRSSPVPPPT 416
>At5g14420.3 68418.m01686 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/45 (28%), Positives = 17/45 (37%)
Frame = -3
Query: 250 PHPRSSQCSSDGEVGPQVVPEARPQLPTHTAQVEEASPQATPPPT 116
P P SS P +P +P +P H + PPPT
Sbjct: 372 PPPMRGGSSSYNSPKPSRLPSFKPSVPPHPTEGYHVRSSPVPPPT 416
>At5g14420.2 68418.m01685 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/45 (28%), Positives = 17/45 (37%)
Frame = -3
Query: 250 PHPRSSQCSSDGEVGPQVVPEARPQLPTHTAQVEEASPQATPPPT 116
P P SS P +P +P +P H + PPPT
Sbjct: 372 PPPMRGGSSSYNSPKPSRLPSFKPSVPPHPTEGYHVRSSPVPPPT 416
>At5g14420.1 68418.m01684 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 468
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/45 (28%), Positives = 17/45 (37%)
Frame = -3
Query: 250 PHPRSSQCSSDGEVGPQVVPEARPQLPTHTAQVEEASPQATPPPT 116
P P SS P +P +P +P H + PPPT
Sbjct: 372 PPPMRGGSSSYNSPKPSRLPSFKPSVPPHPTEGYHVRSSPVPPPT 416
>At4g18400.1 68417.m02731 expressed protein
Length = 107
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -3
Query: 181 PQLPTHTAQVEEASPQ-ATPPPTVDPDRM 98
P P ++Q E P+ +TPP T DP RM
Sbjct: 15 PSPPESSSQPEHPPPETSTPPATFDPSRM 43
>At5g43770.1 68418.m05353 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 187
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/46 (32%), Positives = 17/46 (36%)
Frame = -3
Query: 259 PECPHPRSSQCSSDGEVGPQVVPEARPQLPTHTAQVEEASPQATPP 122
PE P S + GP PE P + E SP TPP
Sbjct: 61 PEIKFPGGSPSEKELPSGPSRGPELAPLEVPELPNIPEISPSETPP 106
>At3g57170.1 68416.m06365 N-acetylglucosaminyl transferase component
family protein / Gpi1 family protein similar to
SP|O14357 N-acetylglucosaminyl-phosphatidylinositol
biosynthetic protein gpi1 {Schizosaccharomyces pombe};
contains Pfam profile PF05024: N-acetylglucosaminyl
transferase component (Gpi1)
Length = 560
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 523 SITLSNQRTRSSAPLKRPNWLTPL 452
S++ SN ++ APLK+P W+ L
Sbjct: 49 SLSFSNSSPQTKAPLKKPKWVDDL 72
>At5g18510.1 68418.m02185 hypothetical protein
Length = 702
Score = 27.5 bits (58), Expect = 9.8
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 500 NPIFSPTQATELADPTEKIE 441
+P+FSP + +E+ D EK+E
Sbjct: 137 SPVFSPLECSEMRDSAEKLE 156
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Frame = -3
Query: 268 SHHPECPHPRSS-QCSSDGEVGPQVVPEARPQLPTHTAQVEEASPQATPPPTVDPDRMKN 92
S PE P P S + + P+ +PQ P E SP+ PP P ++
Sbjct: 522 SPKPEPPKPEESPKPQPPKQETPKPEESPKPQPPKQETPKPEESPKPQPPKQETPKPEES 581
Query: 91 CKP 83
KP
Sbjct: 582 PKP 584
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,022,350
Number of Sequences: 28952
Number of extensions: 333121
Number of successful extensions: 1240
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1234
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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