Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g11f
         (607 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    23   2.6  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    22   4.6  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    21   8.1  

>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 100 TFIMIY*FVFVLTLF*YPLDVKGC*VV 20
           TF +I+  VFV TL    L + GC VV
Sbjct: 209 TFAIIHLSVFVYTLVSVILIIMGCDVV 235


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 365 CRYQLRTATRKRSLLPSATREPDLQPHSSDRTG 463
           C+Y  R  T+  +LL       D +P+S D  G
Sbjct: 82  CKYCNRQFTKSYNLLIHERTHTDERPYSCDICG 114


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = -2

Query: 576 PQLRVLPALVVQERQALR 523
           P+L+  PA++V +R++LR
Sbjct: 181 PRLQRCPAMLVFDRRSLR 198


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,407
Number of Sequences: 336
Number of extensions: 3299
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15352827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)