Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10g11f
(607 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 36 0.003
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 27 2.8
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 3.7
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 26 3.7
SPAC26H5.09c |||GFO/IDH/MocA family oxidoreductase|Schizosacchar... 26 3.7
SPCC1795.03 |gms1||UDP-galactose transporter Gms1|Schizosaccharo... 26 4.9
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 25 6.5
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 25 6.5
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 25 6.5
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 25 6.5
SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ... 25 6.5
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 25 6.5
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 25 8.6
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual 25 8.6
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 36.3 bits (80), Expect = 0.003
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 333 VYIPDRRRQTLADTSYVPQQENEV--YYPQQPENPIFSPTQATELADP 470
VY+PD Y+P+ V YYPQQP P+F ++ TEL DP
Sbjct: 497 VYVPDAT-DAAKPQYYIPKDPYPVPHYYPQQPL-PLFDSSEMTELVDP 542
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 142 KRIPTIPTMETWTPFPTARAIVTE 213
K IPT PT E+ PFP+ A T+
Sbjct: 286 KSIPTTPTGESLWPFPSENANKTQ 309
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +1
Query: 298 SPKPHRRLQRARCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSS 438
S H + + +++ +P+P YR + TLSN++T S
Sbjct: 45 SQDTHSCASKQDAVFQLLSETKIPVPNRYRKISHRLSTLSNKKTLKS 91
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 539 SGRRFGSLGNRYQSGGVQFDLFSGVSQFGR 450
+G FG+ N +GG F + SG FG+
Sbjct: 64 NGGLFGNRNNTTTTGGTGFGMSSGTGMFGQ 93
>SPAC26H5.09c |||GFO/IDH/MocA family
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 369
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +3
Query: 264 VGGGMAAFMYRQPEAAQAPSTGQVYIPDRRRQTLADT 374
+G GM+AF++ P P+ +VY RR T ++
Sbjct: 9 LGTGMSAFIFHYPFLKALPNHFEVYAAWERRATSTES 45
>SPCC1795.03 |gms1||UDP-galactose transporter
Gms1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 353
Score = 25.8 bits (54), Expect = 4.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 279 AAFMYRQPEAAQAPSTGQVYIP 344
A F+Y +PE+ +PS G YIP
Sbjct: 318 ATFLYTKPESKPSPSRG-TYIP 338
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = +3
Query: 372 TSYVPQQENEVYYPQQPENPIFSPTQATELADPTEKIELYSTT 500
TS+ PQ ++ +Y + + S T+ + + T K++ S T
Sbjct: 720 TSFNPQHDSRIYNHNGKQKLVISFTETMDCNEITSKLQFSSKT 762
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 25.4 bits (53), Expect = 6.5
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 154 TIPTMETW-TPFPTARAIVTEEAWS*AVTTILTTTPELWAVVWP 282
T P +ET TP A TE V+TI TTTP + A++ P
Sbjct: 215 TTPMVETMITPMVEAMTTPTEVVGRSMVSTIRTTTP-MEAMITP 257
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 163 TMETWTPFPTARAIVTEEAWS*AVTTILTTTPELWAVV 276
T+ TP+PT T + +VTT LT P V+
Sbjct: 269 TVYVETPYPTTVTTTTTVGYPGSVTTTLTGAPSNGTVI 306
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 163 TMETWTPFPTARAIVTEEAWS*AVTTILTTTPELWAVV 276
T+ TP+PT T + +VTT LT P V+
Sbjct: 347 TVYVETPYPTTVTTTTTVGYPGSVTTTLTGAPSNGTVI 384
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 163 TMETWTPFPTARAIVTEEAWS*AVTTILTTTPELWAVV 276
T+ TP+PT T + +VTT LT P V+
Sbjct: 425 TVYVETPYPTTVTTTTTVGYPGSVTTTLTGAPSNGTVI 462
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 163 TMETWTPFPTARAIVTEEAWS*AVTTILTTTPELWAVV 276
T+ TP+PT T + +VTT LT P V+
Sbjct: 503 TVYVETPYPTTVTTTTTVGYPGSVTTTLTGAPSNGTVI 540
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 163 TMETWTPFPTARAIVTEEAWS*AVTTILTTTPELWAVV 276
T+ TP+PT T + +VTT LT P V+
Sbjct: 581 TVYVETPYPTTVTTTTTVGYPGSVTTTLTGAPSNGTVI 618
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 229 AVTTILTTTPELWAVVWPRS 288
A T IL TTPE W VV +S
Sbjct: 386 AETQILVTTPEKWDVVTRKS 405
>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 454
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 299 LAVHERGHTTAHSSGVVVRIVVTAHDQASSVTIA 198
L H+R + H+S +V I+V +HD AS+ A
Sbjct: 254 LGGHKRLSSRNHNSQPLVCILVGSHDHASAAVAA 287
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 25.4 bits (53), Expect = 6.5
Identities = 9/29 (31%), Positives = 13/29 (44%)
Frame = +3
Query: 390 QENEVYYPQQPENPIFSPTQATELADPTE 476
+ N YPQ + P+ P A DP +
Sbjct: 155 EHNGPVYPQDQQGPVIIPNSAISSTDPDD 183
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 25.0 bits (52), Expect = 8.6
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = +1
Query: 238 TILTTTPELWAVVWPRS-CTASPKPHRRLQRARCTYLI-VAARPLPIPATYRNKKTKSIT 411
T +TT +W VW S CT P+ +R CT LI R + + T K
Sbjct: 392 TTVTTNTNIW-WVWAESRCTEIPE-SKRTVFPNCTMLIDKTGRLIILQQTVPQKPVALTA 449
Query: 412 LSNQR 426
SN+R
Sbjct: 450 SSNKR 454
>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 25.0 bits (52), Expect = 8.6
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +3
Query: 195 SGDSNRGGLVMSRYYNPYYNPRAV 266
S D N G + S YNP +PR +
Sbjct: 346 SNDGNHWGSLSSTIYNPSSSPRTI 369
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,332,756
Number of Sequences: 5004
Number of extensions: 47994
Number of successful extensions: 176
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -