Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10g11f
(607 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003130-1|AAB54124.2| 423|Caenorhabditis elegans Hypothetical ... 37 0.013
Z74032-2|CAA98466.2| 248|Caenorhabditis elegans Hypothetical pr... 35 0.039
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 32 0.37
Z83223-4|CAB05716.2| 534|Caenorhabditis elegans Hypothetical pr... 31 0.48
AL132862-12|CAB60542.1| 380|Caenorhabditis elegans Hypothetical... 29 1.9
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 29 2.6
Z81587-6|CAB04704.1| 417|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z74046-1|CAA98556.2| 178|Caenorhabditis elegans Hypothetical pr... 29 3.4
U97196-12|AAB52456.2| 564|Caenorhabditis elegans Hypothetical p... 29 3.4
U80453-11|AAN63452.2| 503|Caenorhabditis elegans Hypothetical p... 29 3.4
U80453-10|AAN63453.1| 489|Caenorhabditis elegans Hypothetical p... 29 3.4
U80453-9|AAT81206.1| 432|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z81133-5|CAB03442.2| 1838|Caenorhabditis elegans Hypothetical pr... 28 4.5
L13200-7|AAA28189.1| 206|Caenorhabditis elegans Prion-like-(q/n... 28 4.5
Z93785-1|CAB07858.1| 495|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z81116-6|CAB03299.1| 416|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical pr... 28 5.9
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 28 5.9
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 28 5.9
>AF003130-1|AAB54124.2| 423|Caenorhabditis elegans Hypothetical
protein F55A12.6 protein.
Length = 423
Score = 36.7 bits (81), Expect = 0.013
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +3
Query: 147 YPYNPYYGNVDSLSYGSGDSNR--GGLVMSRYYNPYYN-PRAVGGGMAAFMYRQPEA 308
Y N YYGN YG+G N+ GG + YYN YYN GG + Y Q ++
Sbjct: 138 YYGNGYYGNGYGNGYGNGYYNQYNGGYGGNGYYNQYYNGNNYYGGNRGYYNYNQGQS 194
>Z74032-2|CAA98466.2| 248|Caenorhabditis elegans Hypothetical
protein F35B12.3 protein.
Length = 248
Score = 35.1 bits (77), Expect = 0.039
Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 3/113 (2%)
Frame = +3
Query: 114 VMMSCALLVQAYPYNPYYGNVDSLSYGSGDSNRGGLVMSRYYNPYY-NPRAVGG--GMAA 284
+++SC +L AYPY+ YGN D Y Y Y NP GG G
Sbjct: 7 LVVSCGILAAAYPYSQQYGNYDQ-QYSQQSQYYPSSGQQGYRGGYQSNPGMQGGYQGNGQ 65
Query: 285 FMYRQPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYPQQPENPIFSP 443
Y+ + Q GQ R Q Y Q ++ YP++ ++ ++SP
Sbjct: 66 DSYQDFQGYQGYQRGQG--GQRGYQ-----GYQSNQRSQGSYPERYDSSMYSP 111
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 31.9 bits (69), Expect = 0.37
Identities = 27/115 (23%), Positives = 36/115 (31%), Gaps = 2/115 (1%)
Frame = +1
Query: 154 TIPTMETWTPFPTARAIVTEEAWS*AVTTILT--TTPELWAVVWPRSCTASPKPHRRLQR 327
T+PT T TP T T + TT T TT P + T +
Sbjct: 215 TVPTTTTTTPTTTTTTTTTPTTTTTTPTTTTTPATTTSETTTTTPTTTTQTTTKPTTTTT 274
Query: 328 ARCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSSAPLKRPNWLTPLKRSNCT 492
T P T + K+ + T +T S+ TP S CT
Sbjct: 275 TPTTTPTTTTTPTTTTTTAKTTKSTTTTTKTTKTTSTPTTTTTTPKTPFDTSKCT 329
>Z83223-4|CAB05716.2| 534|Caenorhabditis elegans Hypothetical
protein E01G4.4 protein.
Length = 534
Score = 31.5 bits (68), Expect = 0.48
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +3
Query: 246 YYNPRAVGGGMAAFMYRQPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYPQQPE 425
Y NP+A G + +Q + P Y P R++Q +Y P+Q+ + Y QQ +
Sbjct: 27 YQNPQAGYG----YNNQQQQQQGRPQQYAGYPPQRQQQQYNMNAYAPRQQQQQQYQQQQQ 82
Query: 426 N 428
N
Sbjct: 83 N 83
>AL132862-12|CAB60542.1| 380|Caenorhabditis elegans Hypothetical
protein Y73F8A.17 protein.
Length = 380
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = +3
Query: 111 FVMMSCALLVQAYPYNPYYGNVDSLSYGS 197
F M A YPY+PYY L +GS
Sbjct: 311 FAMNQKASFANQYPYHPYYHQYSQLDHGS 339
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 378 YVPQQENEVYYPQQPENPIFSPTQATELADPTEKIE 485
YVPQ+ P PE +P+Q + +PT IE
Sbjct: 1812 YVPQETQAPIAPSNPEPVQPNPSQTVSIPEPTGNIE 1847
>Z81587-6|CAB04704.1| 417|Caenorhabditis elegans Hypothetical
protein T06G6.8 protein.
Length = 417
Score = 28.7 bits (61), Expect = 3.4
Identities = 22/104 (21%), Positives = 43/104 (41%)
Frame = +1
Query: 145 RIPTIPTMETWTPFPTARAIVTEEAWS*AVTTILTTTPELWAVVWPRSCTASPKPHRRLQ 324
R +PT W T + T+ + + ++T+ TTT +L + T P +
Sbjct: 217 RSSKLPTSSVWKATTTPSDLPTKPSRTRSLTSTSTTTAKLPTT----TSTTFAAPQASTE 272
Query: 325 RARCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSSAPLKRP 456
+ T + A P +P ++ +IT ++ S++ K P
Sbjct: 273 PSEATEALATATPADLPTKPSGREITTIT-GTRKLSSTSTTKLP 315
>Z74046-1|CAA98556.2| 178|Caenorhabditis elegans Hypothetical
protein ZC116.1 protein.
Length = 178
Score = 28.7 bits (61), Expect = 3.4
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = +3
Query: 234 YYNPYYN--PRAVGGGMAAFMYRQPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVY 407
YY PYY P A G + +Q +A A ++ Q A + QQ+ + Y
Sbjct: 25 YYTPYYYYYPTAAVAGTTG-VAQQTQAGGASQQAYAQQQPQQNQQYAQGT---QQQQQQY 80
Query: 408 YPQQPE 425
YPQQ +
Sbjct: 81 YPQQTQ 86
>U97196-12|AAB52456.2| 564|Caenorhabditis elegans Hypothetical
protein B0207.1 protein.
Length = 564
Score = 28.7 bits (61), Expect = 3.4
Identities = 22/77 (28%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Frame = +3
Query: 240 NPYYNPRAVGGGMAAFMYRQPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYY--P 413
NP NP + G+ P Q P V P R + + V Q + V P
Sbjct: 63 NPVQNPNKLSTGLPPMTMMLPPTVQEPLPTPVKTPPLPRPP-GNLNPVQQPQIPVQRTPP 121
Query: 414 QQPENPIFSPTQATELA 464
Q P P+ P Q T++A
Sbjct: 122 QCPPPPVPHPPQITQMA 138
>U80453-11|AAN63452.2| 503|Caenorhabditis elegans Hypothetical
protein C23H3.9a protein.
Length = 503
Score = 28.7 bits (61), Expect = 3.4
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
Frame = +1
Query: 154 TIPTMETWTPFPTA-----RAIVTEEAWS*AVTTILTTTPEL--WAVVWPRSCTASPKPH 312
T T T TP PT TE + T TTTP++ WA +W + TA PK +
Sbjct: 216 TATTTTTTTPLPTTTTTQPTTTTTEPTTTTTTTEPTTTTPKVNSWAKLW--TSTAEPKSY 273
>U80453-10|AAN63453.1| 489|Caenorhabditis elegans Hypothetical
protein C23H3.9b protein.
Length = 489
Score = 28.7 bits (61), Expect = 3.4
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
Frame = +1
Query: 154 TIPTMETWTPFPTA-----RAIVTEEAWS*AVTTILTTTPEL--WAVVWPRSCTASPKPH 312
T T T TP PT TE + T TTTP++ WA +W + TA PK +
Sbjct: 212 TATTTTTTTPLPTTTTTQPTTTTTEPTTTTTTTEPTTTTPKVNSWAKLW--TSTAEPKSY 269
>U80453-9|AAT81206.1| 432|Caenorhabditis elegans Hypothetical
protein C23H3.9d protein.
Length = 432
Score = 28.7 bits (61), Expect = 3.4
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
Frame = +1
Query: 154 TIPTMETWTPFPTA-----RAIVTEEAWS*AVTTILTTTPEL--WAVVWPRSCTASPKPH 312
T T T TP PT TE + T TTTP++ WA +W + TA PK +
Sbjct: 155 TATTTTTTTPLPTTTTTQPTTTTTEPTTTTTTTEPTTTTPKVNSWAKLW--TSTAEPKSY 212
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/52 (34%), Positives = 21/52 (40%)
Frame = +1
Query: 238 TILTTTPELWAVVWPRSCTASPKPHRRLQRARCTYLIVAARPLPIPATYRNK 393
T TTPE PRS + +P +RL T AA PIP K
Sbjct: 59 TTTETTPEAPTTSEPRSHSRDARPTQRLPLTWSTVTPTAAPSQPIPTATSRK 110
>Z81133-5|CAB03442.2| 1838|Caenorhabditis elegans Hypothetical protein
T28B8.3a protein.
Length = 1838
Score = 28.3 bits (60), Expect = 4.5
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +1
Query: 202 IVTEEAWS*AVTTILTTTPELWAVVW 279
I EEAWS A+ TIL T +L V W
Sbjct: 1431 IEAEEAWSIAMETILDPTSDLRRVWW 1456
>L13200-7|AAA28189.1| 206|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 96
protein.
Length = 206
Score = 28.3 bits (60), Expect = 4.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 384 PQQENEVYYPQQPENPIFSPTQATELA 464
PQQ+ Y PQQP +PI A +A
Sbjct: 6 PQQQQPGYQPQQPSHPIVGAGAAPTMA 32
>Z93785-1|CAB07858.1| 495|Caenorhabditis elegans Hypothetical
protein W09D10.1 protein.
Length = 495
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = +3
Query: 213 GGLVMSRYYNPYYNPRAVGGGMAAFMYRQPEAAQAPS 323
G V + N N +++GGG A F AA APS
Sbjct: 231 GSFVSANSQNAQQNAQSLGGGFADFSSAPTTAAAAPS 267
>Z81116-6|CAB03299.1| 416|Caenorhabditis elegans Hypothetical
protein T06C12.7 protein.
Length = 416
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 605 ISDSLLRLGLLNFEYFRLW*FRSGRRFGSL 516
I+D ++ L F LW +RS R+FG L
Sbjct: 163 INDDYFKMNTLERMKFALWNYRSERKFGDL 192
>Z73425-2|CAA97788.1| 1126|Caenorhabditis elegans Hypothetical
protein F12F6.6 protein.
Length = 1126
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +3
Query: 300 PEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYPQQPENPIFSPT 446
P++ QAPS +Q A T +PQ + P QP + I PT
Sbjct: 121 PQSVQAPSATPAGPLQAMQQAPAPTPGIPQMNQGAHLPPQP-HQIHQPT 168
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
K07E12.1a protein.
Length = 13100
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 127 ARYWCKRIPTIPTMETWTPFPTARAIVT 210
A Y CK +P + T TW P P +A T
Sbjct: 12338 ADYICKIVPNVETSRTW-PTPRTKATTT 12364
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
Length = 13100
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 127 ARYWCKRIPTIPTMETWTPFPTARAIVT 210
A Y CK +P + T TW P P +A T
Sbjct: 12338 ADYICKIVPNVETSRTW-PTPRTKATTT 12364
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,092,086
Number of Sequences: 27780
Number of extensions: 290161
Number of successful extensions: 1005
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -