Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g11f
         (607 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   5.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.1  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   9.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.4  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 345 DRRRQTLADTSYVPQQENEVYYP 413
           D   QT++ T+ V Q+E E Y P
Sbjct: 338 DLTTQTVSTTADVLQEEEEEYSP 360


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
 Frame = +3

Query: 345  DRRRQTLADTSYVPQQENEV--YYPQQPENPIFSPTQATELADPTEK 479
            DR R+TL      PQQ+ +      QQ +     P      A PT+K
Sbjct: 1437 DRDRKTLTSAPQQPQQQQQQQQQQQQQQQQLNHYPDLHNLYAVPTDK 1483


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +3

Query: 267 GGGMAAFMYRQPEAAQAPSTGQVYIPDRRRQTL 365
           GG     + + PE  Q PS  ++    + RQ L
Sbjct: 342 GGNNIEIIVKDPETLQFPSGMKIISSKKDRQEL 374


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 381 VPQQENEVYYPQQPE 425
           VP + NE+YY   PE
Sbjct: 202 VPGKRNEIYYNCCPE 216


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,950
Number of Sequences: 438
Number of extensions: 4158
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)