Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10g10r
(773 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 329 1e-90
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711... 68 1e-11
06_01_0729 + 5367796-5368071,5368390-5368483,5368708-5368782,536... 53 3e-07
02_05_0058 + 25478274-25478421,25478963-25479142,25479714-254800... 47 2e-05
02_05_0060 + 25484349-25484496,25485514-25485705,25486614-254869... 43 2e-04
12_02_0453 + 19192060-19192301,19192477-19192559,19193246-191933... 42 7e-04
03_01_0535 + 4006284-4006418,4006483-4006599,4007363-4007587,400... 41 0.001
02_01_0487 + 3503003-3503037,3505802-3505833,3506012-3506127,350... 30 1.8
04_01_0376 - 4929447-4929731 29 5.4
02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168 28 7.2
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 329 bits (809), Expect = 1e-90
Identities = 158/231 (68%), Positives = 178/231 (77%)
Frame = -3
Query: 771 LAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYME 592
LA KY MVIVS ILERD H +I+WNTAVVI + GN+IG HRKNHIPRVGDFNES YYME
Sbjct: 181 LAKKYNMVIVSPILERDVNHGEIVWNTAVVIGNHGNIIGIHRKNHIPRVGDFNESTYYME 240
Query: 591 GNTGHPVFATRYGKIAVNICFGRHHVLNWMMFGQNGAEIVFNPSATIAGEGGSEYMWNVE 412
GNTGHPVF T YGKI VNIC+GRHH LNW+ FG NGAEIVFNPSAT+ GE SE MW +E
Sbjct: 241 GNTGHPVFETAYGKIGVNICYGRHHPLNWLAFGLNGAEIVFNPSATV-GE-LSEPMWPIE 298
Query: 411 ARNAAITNCYFTAAINRVGYEEFPNEFTSADGKPAHKDLGLFYGSSYFCGPDGVRCPGLS 232
ARNAAI N YF +INRVG E FPN FTS DGKP H D G FYGSS+F PD P LS
Sbjct: 299 ARNAAIANSYFVGSINRVGTEVFPNPFTSGDGKPQHADFGHFYGSSHFSAPDASCTPSLS 358
Query: 231 RTRDGLLIAAVDLNLNRQIKDRRCYYMTQRLDMYVNSLSKVLELDYKPQVV 79
R RDGL+I+ +DLNL RQIKD+ + MT R D Y + LS+ L+ D+KPQV+
Sbjct: 359 RYRDGLMISDMDLNLCRQIKDKWGFRMTARYDTYASLLSEYLKPDFKPQVI 409
>02_04_0096 +
19669428-19669525,19670770-19670818,19671041-19671132,
19671235-19671386,19671478-19671524,19671617-19671650,
19671769-19671935,19672070-19672166,19672239-19672408
Length = 301
Score = 67.7 bits (158), Expect = 1e-11
Identities = 55/203 (27%), Positives = 89/203 (43%), Gaps = 6/203 (2%)
Frame = -3
Query: 720 EKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNTGHPVFATRYGKIAV 541
E+ ++ +N+ +I G +G +RK+HIP + E Y+ G+TG F T+Y I V
Sbjct: 98 EEANNAHYNSVAIIDADGTDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKAFKTKYATIGV 157
Query: 540 NICFGRHHVLNWMMFGQNGAEIVFNPSATIAGEG-----GSEYMWNVEARNAAITNCYFT 376
IC+ + GAEI+F P+A I E S W + A N
Sbjct: 158 GICWDQWFPECARAMVLQGAEILFYPTA-IGSEPQDNNLDSREHWKRVMQGHAGANLVPL 216
Query: 375 AAINRVGYEEFPNEFTSADGKPAHKDLGL-FYGSSYFCGPDGVRCPGLSRTRDGLLIAAV 199
A NR+G E E H + + F+G+S+ GP G + + +L+A
Sbjct: 217 VASNRIGRETVETE---------HGESTITFFGNSFIAGPTGEIVKLANDKDEDVLVAEF 267
Query: 198 DLNLNRQIKDRRCYYMTQRLDMY 130
DL+ + + + +R D+Y
Sbjct: 268 DLDEIKSTRHGWGIFRDRRPDLY 290
>06_01_0729 +
5367796-5368071,5368390-5368483,5368708-5368782,
5368919-5368997,5369155-5369170,5369260-5369346,
5369451-5369533,5369616-5369769
Length = 287
Score = 52.8 bits (121), Expect = 3e-07
Identities = 51/202 (25%), Positives = 86/202 (42%), Gaps = 5/202 (2%)
Frame = -3
Query: 720 EKHSDILWNTAVVISDTGNVIGKHRKNHIPRV---GD--FNESNYYMEGNTGHPVFATRY 556
E+ S L+NT VI G + KHRK H+ + GD F ES+ + G + T
Sbjct: 67 ERSSGRLFNTCCVIGPDGQIKAKHRKLHLFEIDIPGDITFRESDTFTAGQE-PTIVDTDV 125
Query: 555 GKIAVNICFGRHHVLNWMMFGQNGAEIVFNPSATIAGEGGSEYMWNVEARNAAITNCYFT 376
G+I + IC M++ GA ++ PSA G + +W++ ++ A+ N F
Sbjct: 126 GRIGIGICHDIRFPELAMLYRSRGAHLICYPSAFNMSTG--QLLWDLMQKSRAVDNQLFV 183
Query: 375 AAINRVGYEEFPNEFTSADGKPAHKDLGLFYGSSYFCGPDGVRCPGLSRTRDGLLIAAVD 196
+ PN A D + +G S GP G + + ++ +D
Sbjct: 184 VTCSPA---RDPN---------AESDY-MIWGHSSLIGPFG-EVIATAGHEEATVVGEID 229
Query: 195 LNLNRQIKDRRCYYMTQRLDMY 130
++ + I+D M +R D+Y
Sbjct: 230 HSMIQTIRDNLPLEMQRREDLY 251
>02_05_0058 +
25478274-25478421,25478963-25479142,25479714-25480007,
25480261-25480564,25480672-25480751,25480765-25480934
Length = 391
Score = 46.8 bits (106), Expect = 2e-05
Identities = 53/195 (27%), Positives = 83/195 (42%), Gaps = 6/195 (3%)
Frame = -3
Query: 771 LAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYME 592
LA KY + +V ++ER L+NT + G +GKHRK + G + +
Sbjct: 119 LAGKYKIFLVMGVVERV---GYTLYNTVLFFDPLGKYLGKHRK--VMPTGLERVFWGFGD 173
Query: 591 GNTGHPVFATRYGKIAVNICF-GRHHVLNWMMFGQNGAEIVFNPSATIAGEGGSEYMWNV 415
G+T PV+ T GKI IC+ R +L M+ + G +I P+A + W
Sbjct: 174 GST-IPVYDTPIGKIGAVICWENRMPLLRTAMYAK-GVQIYCAPTADFSPS------WQA 225
Query: 414 EARNAAITNCYFTAAIN----RVGYEEFPN-EFTSADGKPAHKDLGLFYGSSYFCGPDGV 250
+ A+ F + N R Y P F D +P+ + + ++ G S P G
Sbjct: 226 SMTHIAVEGGCFVLSANQFCRRKNYPPAPEYTFGGLDEEPSPESV-IWPGGSSIVSPSGT 284
Query: 249 RCPGLSRTRDGLLIA 205
G + +GLL A
Sbjct: 285 VLAGPNYEGEGLLTA 299
>02_05_0060 +
25484349-25484496,25485514-25485705,25486614-25486907,
25487140-25487421,25487571-25487743
Length = 362
Score = 43.2 bits (97), Expect = 2e-04
Identities = 51/198 (25%), Positives = 84/198 (42%), Gaps = 5/198 (2%)
Frame = -3
Query: 771 LAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYME 592
+A KY + +V ++ER+ L+ + + G +GKHRK +P + + +
Sbjct: 123 MAGKYKVFLVMGVIERE---GYTLYCSVLFFDPLGRYLGKHRK-LMPTALE-RIIWGFGD 177
Query: 591 GNTGHPVFATRYGKIAVNICF-GRHHVLNWMMFGQNGAEIVFNPSATIAGEGGSEYMWNV 415
G+T PV+ T GKI IC+ + +L ++G+ G EI P+A S +W
Sbjct: 178 GST-IPVYDTPLGKIGALICWENKMPLLRTALYGK-GIEIYCAPTA------DSRQVWQA 229
Query: 414 EARNAAITNCYFTAAIN----RVGYEEFPNEFTSADGKPAHKDLGLFYGSSYFCGPDGVR 247
+ A+ F + N R Y P S G+ D + G S P G
Sbjct: 230 SMTHIALEGGCFVLSANQFCRRKDYPPPPEYVFSGLGEEPSPDTVVCPGGSVIISPSGEV 289
Query: 246 CPGLSRTRDGLLIAAVDL 193
G + + L+ A +DL
Sbjct: 290 LAGPNYEGEALITADLDL 307
>12_02_0453 +
19192060-19192301,19192477-19192559,19193246-19193328,
19193616-19193668,19194041-19194169,19194585-19194643,
19195317-19195429,19195571-19195663,19195810-19195912,
19196233-19196315,19196407-19196448
Length = 360
Score = 41.5 bits (93), Expect = 7e-04
Identities = 36/125 (28%), Positives = 60/125 (48%), Gaps = 7/125 (5%)
Frame = -3
Query: 723 DEKHSDILWNTAVVISDTGNVIGKHRKNH-----IPRVGDFNESNYYMEGNTGHPVFATR 559
D+ H +NT V+I D+G + +RK H +P + ES + G+T V +
Sbjct: 171 DDSHQ---YNTHVLIDDSGEIRSSYRKIHLFDVDVPGNMVYKESRFTTAGDTVVAV-DSP 226
Query: 558 YGKIAVNICFG-RHHVLNWMMFGQNGAEIVFNPSATIAGEGGSEYMWNVEARNAAI-TNC 385
+G++ + +C+ R L + ++ A+++ PSA G E W + R AI T C
Sbjct: 227 FGRLGLTVCYDLRFPELYQCLRFKHQAQVLLVPSAFTKVTG--EAHWEILLRARAIETQC 284
Query: 384 YFTAA 370
Y AA
Sbjct: 285 YVIAA 289
>03_01_0535 +
4006284-4006418,4006483-4006599,4007363-4007587,
4008112-4008205,4008587-4008661,4009045-4009123,
4009385-4009400,4009441-4009584,4009822-4009904,
4010012-4010093
Length = 349
Score = 40.7 bits (91), Expect = 0.001
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Frame = -3
Query: 720 EKHSDILWNTAVVISDTGNVIGKHRKNH-----IPRVGDFNESNYYMEGNTGHPVFATRY 556
E+ + L+NT V G + GKHRK H IP F ES G V T
Sbjct: 134 ERSGNKLYNTCCVFGSDGELKGKHRKIHLFDIDIPGKITFKESKTLTAGQ-DLTVVDTDV 192
Query: 555 GKIAVNICFGRHHVLNWMMFGQNGAEIVFNPSA 457
G+I + IC+ M++ GA ++ P A
Sbjct: 193 GRIGIGICYDIRFQELAMLYAARGAHLLCYPGA 225
>02_01_0487 +
3503003-3503037,3505802-3505833,3506012-3506127,
3506227-3506437,3506555-3506792,3507075-3507252,
3507962-3508079,3508167-3508373,3509134-3509234
Length = 411
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/64 (32%), Positives = 32/64 (50%)
Frame = -3
Query: 471 FNPSATIAGEGGSEYMWNVEARNAAITNCYFTAAINRVGYEEFPNEFTSADGKPAHKDLG 292
F+PS I GEGG ++ + RN + + +R G +EF NE A +H++L
Sbjct: 45 FSPSNKI-GEGGFGSVYKGKLRNGKLVAVKVLSLESRQGAKEFLNEL-MAISNVSHENLV 102
Query: 291 LFYG 280
YG
Sbjct: 103 KLYG 106
>04_01_0376 - 4929447-4929731
Length = 94
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 546 RSCRIWSQIQDGRCYLPCSSW 608
RSC W +Q GRC CS+W
Sbjct: 63 RSCAAW--LQQGRCSAGCSAW 81
>02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168
Length = 336
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +1
Query: 493 SEHHPVQDVVPSE-ADVHRDLAVSGRKYRMAGVTFHVVV 606
+E HP+ DV+PSE +V D + R MAG H +V
Sbjct: 282 AEVHPIDDVMPSEVVEVKVDDEETNRTDEMAGDGDHAMV 320
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,646,985
Number of Sequences: 37544
Number of extensions: 434474
Number of successful extensions: 1225
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1222
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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