Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10g10r
(773 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25903| Best HMM Match : No HMM Matches (HMM E-Value=.) 75 5e-14
SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0) 41 0.001
SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10) 40 0.002
SB_10985| Best HMM Match : E-MAP-115 (HMM E-Value=5.5) 33 0.19
SB_25537| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_33872| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_8338| Best HMM Match : PA (HMM E-Value=5.7e-10) 29 3.2
SB_19481| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_55284| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_6267| Best HMM Match : DUF930 (HMM E-Value=3.6) 29 5.5
SB_33687| Best HMM Match : Filament (HMM E-Value=0.1) 28 7.3
SB_21829| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.3
SB_13864| Best HMM Match : FtsX (HMM E-Value=1.6) 28 7.3
SB_14352| Best HMM Match : NHL (HMM E-Value=2.8026e-45) 28 9.6
>SB_25903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 75.4 bits (177), Expect = 5e-14
Identities = 34/59 (57%), Positives = 45/59 (76%)
Frame = -3
Query: 249 RCPGLSRTRDGLLIAAVDLNLNRQIKDRRCYYMTQRLDMYVNSLSKVLELDYKPQVVHE 73
R GLSRTRDGLL+ VDLNL RQ+KD+ + MT RL+MY SLS+ ++ +Y+P +VHE
Sbjct: 38 RYHGLSRTRDGLLVTEVDLNLCRQVKDKWGFQMTSRLEMYAKSLSEAVQRNYEPPIVHE 96
>SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0)
Length = 242
Score = 40.7 bits (91), Expect = 0.001
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Frame = -3
Query: 756 AMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNH-----IPRVGDFNESNYYME 592
A ++ SI ER L+NT++ +GN++GKHRK H +P F ES
Sbjct: 80 AYIVGGSIPERASNRK--LYNTSLSYDPSGNLMGKHRKIHLFDIDVPGKIRFQESEVLSP 137
Query: 591 GNTGHPVFATRYGKIAVNICF 529
G + T Y KI + IC+
Sbjct: 138 GE-NLTILDTEYCKIGIGICY 157
>SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10)
Length = 128
Score = 39.9 bits (89), Expect = 0.002
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Frame = -3
Query: 756 AMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNH-----IPRVGDFNESNYYME 592
A ++ SI ER L+NT++ +GN++GKHRK H +P F ES
Sbjct: 36 AYIVGGSIPERASNGK--LYNTSLSYDPSGNLMGKHRKIHLFDIDVPGKIRFQESEVLSP 93
Query: 591 GNTGHPVFATRYGKIAVNICF 529
G + T Y KI + IC+
Sbjct: 94 GE-NLTILDTEYCKIGIGICY 113
>SB_10985| Best HMM Match : E-MAP-115 (HMM E-Value=5.5)
Length = 320
Score = 33.5 bits (73), Expect = 0.19
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +1
Query: 472 DDLRSVLSEHHPVQDVVPSEADVHRDL 552
DD+R LS+H P +DVV EADV + L
Sbjct: 266 DDVREELSQHVPQEDVVIKEADVKKQL 292
>SB_25537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 494
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Frame = -3
Query: 267 CGPDG----VRCPGLSRTRDGL--LIAAVDLNLNRQIKDRRCYYMTQRLDMYVNSLSKVL 106
C PDG VRC + ++R + L A + + N ++ RRC + +L+ NS+S++L
Sbjct: 183 CRPDGYIPLVRCSVVLQSRSCIQTLRATLQNDWNAILRKRRCNVVESKLNHGANSISRLL 242
>SB_33872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 716
Score = 29.5 bits (63), Expect = 3.2
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
Frame = -3
Query: 696 NTAVVISDTGNVIGK---HRKNHIPRVGDFNE----SNYYMEGN-TGHPVFATRYGKI 547
NTA +IS+TG+VI K H K + P D + Y GN TG PV+A YG++
Sbjct: 52 NTAKIISNTGDVIYKTRTHEKVYEPSEKDPSAIPPFLAYSPSGNVTGDPVYA-NYGRV 108
>SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = -3
Query: 756 AMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRK 643
A ++ SI ER L+NT++ +GN++GKHRK
Sbjct: 82 AYIVGGSIPERASNGK--LYNTSLSYDPSGNLMGKHRK 117
>SB_8338| Best HMM Match : PA (HMM E-Value=5.7e-10)
Length = 326
Score = 29.5 bits (63), Expect = 3.2
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
Frame = -3
Query: 696 NTAVVISDTGNVIGK---HRKNHIPRVGDFNE----SNYYMEGN-TGHPVFATRYGKI 547
NTA +IS+TG+VI K H K + P D + Y GN TG PV+A YG++
Sbjct: 143 NTAKIISNTGDVIYKTRTHEKVYEPSEKDPSAIPPFLAYSPSGNVTGDPVYA-NYGRV 199
>SB_19481| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 65
Score = 28.7 bits (61), Expect = 5.5
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = -1
Query: 185 TDRSKTDAVIT*PNAWTCT*TVSAKYSSWITSRRSYTKMKSNFKRSRSNIDHRNLC 18
T+ + AVIT W C T+S K+ + S T K F I+HR C
Sbjct: 12 TEENVYGAVITRTECWGCNATISIKH-----AEMSVTDYKCVFYTKTVGINHRTAC 62
>SB_55284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 207
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +1
Query: 1 EIRRKIHR--FRWSMLERDRLKLLFIFVYDLRLVIQLEYFAETVHVHVQALGHVITASVF 174
EIR ++ R RW + R + +L +F L ++ L Y + + + ++ITAS+F
Sbjct: 148 EIRARVIREGHRWYRVRRG-IYILLVFFNGLLWLVSLSYINSLSDLDKKCMDNLITASIF 206
>SB_6267| Best HMM Match : DUF930 (HMM E-Value=3.6)
Length = 502
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 148 PTPG-HVREQSQQSTRAGLQAAGRTRK*KAILSDPVPTLTTEIYVF 14
P+PG H REQS R G + + R+ + +PT ++YVF
Sbjct: 21 PSPGKHAREQSCARHRPGRLPSRQPRRTNLRPLEGLPTFVGDVYVF 66
>SB_33687| Best HMM Match : Filament (HMM E-Value=0.1)
Length = 700
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -3
Query: 720 EKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYME 592
+K D LW A + D KH++N I R +F E ++Y E
Sbjct: 391 QKRFDTLWVKAKSMMDEET---KHKENAIKRSKEFEERSHYFE 430
>SB_21829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 498
Score = 28.3 bits (60), Expect = 7.3
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = +1
Query: 19 HRFRWSMLERDRLKLLFIFVYDLRLVIQLEYFAETVHVHVQALGHVITASVFDLSVQVQV 198
HR + + + +Y RL + + + E+VHVHV L H +T VF L V V V
Sbjct: 430 HRLSVVTFSDESVHVYITCLYHHRLSV-VTFSDESVHVHVTCLPHAVT-PVFCLLVVVWV 487
>SB_13864| Best HMM Match : FtsX (HMM E-Value=1.6)
Length = 269
Score = 28.3 bits (60), Expect = 7.3
Identities = 30/119 (25%), Positives = 40/119 (33%), Gaps = 3/119 (2%)
Frame = -1
Query: 440 AAASTCGTLKLGTQLSRTATSQXXXXXXXXXXXXXXXXXXTGNRHTKTWACSTDRATSAA 261
AAAS T + TAT+ T A +T T+AA
Sbjct: 119 AAASVAATAAAAATAAATATATTTATAATATAAATATATGTTTATATVTATATATVTAAA 178
Query: 260 ---LTALGAPVCPAPETAC*SRP*T*T*TDRSKTDAVIT*PNAWTCT*TVSAKYSSWIT 93
TA TA + T T T + T T A T T TV+A ++ +T
Sbjct: 179 TATATATATATATTTSTATVTATATVTVTATAATTVTATVTAATTVTVTVTATAATTVT 237
>SB_14352| Best HMM Match : NHL (HMM E-Value=2.8026e-45)
Length = 784
Score = 27.9 bits (59), Expect = 9.6
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = -3
Query: 687 VVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNTGHPVFATRYGKIAVNI 535
+ +S T + G+H + R +ES Y++ GH FAT+ + + I
Sbjct: 490 LTVSYTPRIHGEHEITILARGQHVDESPYHVHVKKGHMNFATKNTPVCLRI 540
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,484,516
Number of Sequences: 59808
Number of extensions: 500364
Number of successful extensions: 1374
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1374
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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