Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g10r
         (773 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    23   2.4  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    23   2.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.3  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   9.6  

>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/60 (18%), Positives = 25/60 (41%)
 Frame = -3

Query: 498 FGQNGAEIVFNPSATIAGEGGSEYMWNVEARNAAITNCYFTAAINRVGYEEFPNEFTSAD 319
           +G  G +I+ +    +   G  ++   ++ +     + Y   AIN   YE+   +F   +
Sbjct: 187 YGTRGKKIILDALEELDKRGVMDFQIGLQRKKDTTFDDYLDYAINPFDYEKRSTDFQDVE 246


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/60 (18%), Positives = 25/60 (41%)
 Frame = -3

Query: 498 FGQNGAEIVFNPSATIAGEGGSEYMWNVEARNAAITNCYFTAAINRVGYEEFPNEFTSAD 319
           +G  G +I+ +    +   G  ++   ++ +     + Y   AIN   YE+   +F   +
Sbjct: 187 YGTRGKKIILDALEELDKRGVMDFQIGLQRKKDTTFDDYLDYAINPFDYEKRSTDFQDVE 246


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 478 LRSVLSEHHPVQDVVPSEADVHRDLAVSGRKYRMAGVTFHVVVG 609
           +R  LS   P+Q   P + + +  L VS     MAGV +  V+G
Sbjct: 810 VREKLSSSQPMQ---PPQQNPYMFLPVSYMSTTMAGVIYPPVIG 850


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 327  SADGKPAHKDLGLFYGSSYFCGPDGVRCP 241
            +AD KP  K    F       GP+G++ P
Sbjct: 1119 TADNKPQLKPQKPFTSPGGIPGPNGIKMP 1147


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -3

Query: 489 NGAEIVFNPSATIAGEGGSEYMWNVEARNAAITN 388
           +G +I+   S+ I     +EY+W V  +   I N
Sbjct: 352 SGIKIIKQISSNIYERQNNEYIWIVSNKYQKIAN 385


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,723
Number of Sequences: 438
Number of extensions: 4415
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)