Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10g10f
(636 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 174 4e-44
03_01_0535 + 4006284-4006418,4006483-4006599,4007363-4007587,400... 43 2e-04
06_01_0729 + 5367796-5368071,5368390-5368483,5368708-5368782,536... 41 0.001
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711... 37 0.015
02_05_0058 + 25478274-25478421,25478963-25479142,25479714-254800... 34 0.082
02_05_0060 + 25484349-25484496,25485514-25485705,25486614-254869... 30 1.3
10_08_0747 - 20272157-20272456,20272538-20272664,20272770-202728... 30 1.8
04_04_0835 + 28538032-28539006,28539113-28539203,28539291-285394... 29 2.3
03_02_0801 + 11343227-11343885,11344018-11344087,11344362-113444... 28 5.4
07_01_0076 + 562248-562430,562540-562637,562887-562954,563376-56... 27 9.4
06_01_0944 + 7264833-7265120,7265511-7265600,7265702-7265798,726... 27 9.4
06_01_0326 + 2372176-2373057,2373146-2373610 27 9.4
02_05_0231 + 27037091-27039466 27 9.4
01_07_0069 + 40869496-40869535,40869627-40869663,40870241-408703... 27 9.4
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 174 bits (424), Expect = 4e-44
Identities = 96/197 (48%), Positives = 123/197 (62%), Gaps = 8/197 (4%)
Frame = +2
Query: 68 SLESIINNNLTGRDLEEFNRIHFGRR--NNLE-IKLKESSIXXXXXXXXXXXXXXFPAKD 238
SL ++ +NL+ +E +R+ G LE I L E++ F A
Sbjct: 28 SLHRLLQSNLSPELFKEASRLLLGLNCGRALEAISLPEATSALAKAHNFDVQAFRFDADK 87
Query: 239 EQTRPPRIVKVGIVQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQ----- 403
E R PR+++VG++Q+SIA+PT +QKKAI KVK +ID AG GVNI+C Q
Sbjct: 88 EYLRQPRVIRVGLIQNSIAIPTTSHFADQKKAIMEKVKPMIDAAGDAGVNILCLQVSQLS 147
Query: 404 ELWNMPFAFCTREKQPWCEFAESAEDGPTTTFLRELAIKYAMVIVSSILERDEKHSDILW 583
E W MPFAFCTREK+ WCEFAE DG +T FL++LA KY MVIVS ILERD H +I+W
Sbjct: 148 EAWTMPFAFCTREKR-WCEFAEPV-DGESTQFLQQLAKKYNMVIVSPILERDVNHGEIVW 205
Query: 584 NTAVVISDTGNVIGKHR 634
NTAVVI + GN+IG HR
Sbjct: 206 NTAVVIGNHGNIIGIHR 222
>03_01_0535 +
4006284-4006418,4006483-4006599,4007363-4007587,
4008112-4008205,4008587-4008661,4009045-4009123,
4009385-4009400,4009441-4009584,4009822-4009904,
4010012-4010093
Length = 349
Score = 43.2 bits (97), Expect = 2e-04
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Frame = +2
Query: 314 VNEQKKAIFNKVKKIIDVAGQEGVNIICFQELWNMPFAFCTREKQPWCEFAESAEDG--- 484
V K + ++ I+ A G ++ E+WN P++ + E+AE E G
Sbjct: 55 VTADKARNIARAREAIEAAAAGGAKLVLLPEIWNGPYS-----NDSFPEYAEDIEAGGDA 109
Query: 485 -PTTTFLRELAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHR 634
P+ + + E+A + +V + E+ + L+NT V G + GKHR
Sbjct: 110 APSFSMMSEVARSLQITLVGGSIS--ERSGNKLYNTCCVFGSDGELKGKHR 158
>06_01_0729 +
5367796-5368071,5368390-5368483,5368708-5368782,
5368919-5368997,5369155-5369170,5369260-5369346,
5369451-5369533,5369616-5369769
Length = 287
Score = 40.7 bits (91), Expect = 0.001
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Frame = +2
Query: 392 ICFQELWNMPFAFCTREKQPWCEFAESAEDG--PTTTFLRELAIKYAMVIVSSILERDEK 565
+ FQE+WN P++ E P E + G P+ + L E+A + + IV + E+
Sbjct: 16 VLFQEIWNCPYSM---ETLP--SHGEDIDGGASPSVSMLSEVAARRRITIVGGSIP--ER 68
Query: 566 HSDILWNTAVVISDTGNVIGKHR 634
S L+NT VI G + KHR
Sbjct: 69 SSGRLFNTCCVIGPDGQIKAKHR 91
>02_04_0096 +
19669428-19669525,19670770-19670818,19671041-19671132,
19671235-19671386,19671478-19671524,19671617-19671650,
19671769-19671935,19672070-19672166,19672239-19672408
Length = 301
Score = 36.7 bits (81), Expect = 0.015
Identities = 24/95 (25%), Positives = 50/95 (52%)
Frame = +2
Query: 350 KKIIDVAGQEGVNIICFQELWNMPFAFCTREKQPWCEFAESAEDGPTTTFLRELAIKYAM 529
+++I A ++G NI+ QEL+ + FC ++ + + A+ + PT ++LA + +
Sbjct: 32 ERLIREAHKKGANIVLVQELFEGQY-FCQAQRLDFFQRAKPYKGNPTIIRFQKLAKELEV 90
Query: 530 VIVSSILERDEKHSDILWNTAVVISDTGNVIGKHR 634
VI S E+ ++ +N+ +I G +G +R
Sbjct: 91 VIPVSFF---EEANNAHYNSVAIIDADGTDLGLYR 122
>02_05_0058 +
25478274-25478421,25478963-25479142,25479714-25480007,
25480261-25480564,25480672-25480751,25480765-25480934
Length = 391
Score = 34.3 bits (75), Expect = 0.082
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 13/114 (11%)
Frame = +2
Query: 332 AIFNKVKKIIDVAGQEGVNIICFQELW------NMPFAFC-----TREKQPWCEFAESAE 478
A +K +K++ A G I+ F E++ F + K+ + ++ +A
Sbjct: 47 ATLDKAEKLVAEAAGYGSQIVLFPEVFVGGYPHGSTFGLTIGNRSAKGKEDFHKYHAAAI 106
Query: 479 D--GPTTTFLRELAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHR 634
D GP T L LA KY + +V ++ER L+NT + G +GKHR
Sbjct: 107 DVPGPEVTRLAALAGKYKIFLVMGVVERV---GYTLYNTVLFFDPLGKYLGKHR 157
>02_05_0060 +
25484349-25484496,25485514-25485705,25486614-25486907,
25487140-25487421,25487571-25487743
Length = 362
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/51 (31%), Positives = 26/51 (50%)
Frame = +2
Query: 482 GPTTTFLRELAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHR 634
GP T L +A KY + +V ++ER+ L+ + + G +GKHR
Sbjct: 114 GPEVTRLAAMAGKYKVFLVMGVIERE---GYTLYCSVLFFDPLGRYLGKHR 161
>10_08_0747 -
20272157-20272456,20272538-20272664,20272770-20272843,
20272928-20272971,20273697-20276223
Length = 1023
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/74 (21%), Positives = 31/74 (41%)
Frame = +2
Query: 407 LWNMPFAFCTREKQPWCEFAESAEDGPTTTFLRELAIKYAMVIVSSILERDEKHSDILWN 586
+WN+ + +E QP E A +D R++ + + ++ D D+ W+
Sbjct: 765 VWNLEYCLQLQESQPSTETALDLDDS-GAHLPRDIVVARRVAPLAPDASADAAGDDMSWS 823
Query: 587 TAVVISDTGNVIGK 628
+ TGNV +
Sbjct: 824 ETASFTATGNVFSQ 837
>04_04_0835 +
28538032-28539006,28539113-28539203,28539291-28539448,
28539543-28539594,28539707-28539786,28539890-28539983,
28540078-28540633,28541160-28541259,28541576-28541617,
28542445-28542588
Length = 763
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -1
Query: 483 PSSADSANSHHGCFSLVQNAKGMFHNSWKQMMLTPSW 373
PS+ S N F L++N NSW Q+++T W
Sbjct: 628 PSTTASVNLDESQFKLLRNCFQGTSNSWGQVIVTAGW 664
>03_02_0801 +
11343227-11343885,11344018-11344087,11344362-11344433,
11344511-11344980,11345626-11346598
Length = 747
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -1
Query: 456 HHGCFSLVQNAKGMFHNSWKQMMLTPSWP--ATSMIFLTLLKIAFF 325
H C ++++ + G+ N W+ + PS+P SMI L + F
Sbjct: 649 HSSCRNVIERSFGVLKNKWRILFHLPSYPQQKQSMIICACLALHNF 694
>07_01_0076 +
562248-562430,562540-562637,562887-562954,563376-563421,
563661-563767,563978-564027,564120-564202,564705-564819
Length = 249
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -3
Query: 256 RGSGLLVLGRESVCGDV 206
+GSG++VLG E CGDV
Sbjct: 61 KGSGVVVLGSEVGCGDV 77
>06_01_0944 +
7264833-7265120,7265511-7265600,7265702-7265798,
7265927-7265988,7266508-7266596,7266702-7266822,
7266915-7267058,7267492-7267820,7268154-7268394,
7269042-7269245,7271150-7271619,7272703-7272746,
7273121-7273211,7273494-7273596,7273682-7273783,
7274214-7274300,7274421-7274531
Length = 890
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 168 KNPRSLQLRRLTSTSPHTLSRPRTSRPDPREL 263
K P + L RL + + H L+ T RP+P++L
Sbjct: 106 KRPHQVMLTRLLALAAHALAEAET-RPEPQDL 136
>06_01_0326 + 2372176-2373057,2373146-2373610
Length = 448
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 295 RDGMLNYSYLHNSRGSGLLVLGRESVCGDVEVSLLSCSD 179
RD M ++ S G G+ V+G ++ D VS+ +CSD
Sbjct: 233 RDSMHHFGIRGESDGDGISVMGSSNIWID-HVSMSNCSD 270
>02_05_0231 + 27037091-27039466
Length = 791
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = -3
Query: 304 GGHRDGMLNYSYLHNSRGSGLLVLGRE 224
GG+ G+ SYLH++ +G++++G E
Sbjct: 421 GGNLTGLRKGSYLHDAGAAGMVLIGPE 447
>01_07_0069 +
40869496-40869535,40869627-40869663,40870241-40870387,
40872360-40872405,40872580-40872846,40873151-40873540
Length = 308
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +2
Query: 224 FPAKDEQTRPPRIVKVGIVQHSIAVPTDRPVNEQKKAIF 340
F K+ PPRI V HS A P D E+K+ +
Sbjct: 87 FDTKEMAIAPPRIQPVSAHLHSSASPKDSDHQEKKQVCY 125
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,705,895
Number of Sequences: 37544
Number of extensions: 379056
Number of successful extensions: 1147
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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