Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10g10f
(636 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42548| Best HMM Match : DNA_binding_1 (HMM E-Value=5.2) 50 1e-06
SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0) 40 0.002
SB_34841| Best HMM Match : ResIII (HMM E-Value=1.6) 31 0.78
SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10) 31 1.0
SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022) 30 1.8
SB_47367| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_27173| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_24587| Best HMM Match : ResIII (HMM E-Value=0.82) 29 3.2
SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18) 28 5.5
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_27649| Best HMM Match : ResIII (HMM E-Value=0.43) 28 7.3
SB_25563| Best HMM Match : HEAT (HMM E-Value=2.5e-20) 28 7.3
SB_59009| Best HMM Match : DEAD (HMM E-Value=0.87) 28 7.3
SB_41929| Best HMM Match : ResIII (HMM E-Value=1.5) 28 7.3
SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1) 28 7.3
SB_3895| Best HMM Match : ResIII (HMM E-Value=1.1) 28 7.3
SB_24441| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_15536| Best HMM Match : MdcD (HMM E-Value=3.9) 27 9.7
>SB_42548| Best HMM Match : DNA_binding_1 (HMM E-Value=5.2)
Length = 101
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/92 (29%), Positives = 44/92 (47%)
Frame = +2
Query: 50 MENETHSLESIINNNLTGRDLEEFNRIHFGRRNNLEIKLKESSIXXXXXXXXXXXXXXFP 229
M E SL + NL DL+E RI +G + ++ L +++
Sbjct: 1 MAAEFESLNKTLEKNLPAEDLKEVKRILYGNPVS-DLSLPAAAVSVAAELDFELAGYKID 59
Query: 230 AKDEQTRPPRIVKVGIVQHSIAVPTDRPVNEQ 325
A E+ R PR+V++G VQ+ I PT+ P+ +Q
Sbjct: 60 AAAEELRQPRLVRIGAVQNKIVEPTNMPIAKQ 91
>SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 39.5 bits (88), Expect = 0.002
Identities = 37/129 (28%), Positives = 64/129 (49%), Gaps = 1/129 (0%)
Frame = +2
Query: 251 PPRIVKVGIVQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQELWNMPFAF 430
P + ++G+VQ +AV ++ N Q+ K+K+ + G I+ E +N P+
Sbjct: 4 PILVFRIGLVQ--LAVTANKLQNLQRAR--EKIKEAVAA----GAKIVALPECFNSPYG- 54
Query: 431 CTREKQPWCEFAESAEDGPTTTFLRELAIKYAMVIVS-SILERDEKHSDILWNTAVVISD 607
Q + ++AE G ++ L E+A + IV SI ER L+NT++
Sbjct: 55 ----TQYFKDYAEEIP-GESSNMLAEVAKETGAYIVGGSIPERASNGK--LYNTSLSYDP 107
Query: 608 TGNVIGKHR 634
+GN++GKHR
Sbjct: 108 SGNLMGKHR 116
>SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0)
Length = 242
Score = 39.5 bits (88), Expect = 0.002
Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 1/126 (0%)
Frame = +2
Query: 260 IVKVGIVQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQELWNMPFAFCTR 439
+ ++G+VQ +AV ++ N Q+ K+K+ + G I+ E +N P+
Sbjct: 5 VFRIGLVQ--LAVTANKLQNLQRAR--EKIKEAVAA----GAKIVALPECFNSPYG---- 52
Query: 440 EKQPWCEFAESAEDGPTTTFLRELAIKYAMVIVS-SILERDEKHSDILWNTAVVISDTGN 616
Q + ++AE G ++ L E+A + IV SI ER L+NT++ +GN
Sbjct: 53 -TQYFKDYAEEIP-GESSNMLAEVAKETGAYIVGGSIPERASNRK--LYNTSLSYDPSGN 108
Query: 617 VIGKHR 634
++GKHR
Sbjct: 109 LMGKHR 114
>SB_34841| Best HMM Match : ResIII (HMM E-Value=1.6)
Length = 949
Score = 31.1 bits (67), Expect = 0.78
Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +2
Query: 230 AKDEQTRPPRIVKVGIVQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 367
A D + P VK H + +PT++P+ E + + +++K+ ++ +V
Sbjct: 762 AHDHRNNPSLAVKAQTYHHYLCIPTEKPIEEWRPSELWHKLDRLAEV 808
>SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10)
Length = 128
Score = 30.7 bits (66), Expect = 1.0
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Frame = +2
Query: 461 FAESAED--GPTTTFLRELAIKYAMVIVS-SILERDEKHSDILWNTAVVISDTGNVIGKH 631
F + AE+ G ++ L E+A + IV SI ER L+NT++ +GN++GKH
Sbjct: 12 FKDYAEEIPGESSNMLAEVAKETGAYIVGGSIPERASNGK--LYNTSLSYDPSGNLMGKH 69
Query: 632 R 634
R
Sbjct: 70 R 70
>SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)
Length = 1671
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 571 RMLLVPF*YRGHDHHCVLDGEFPKE 497
R L+ PF +R +DH V+D FPK+
Sbjct: 74 RKLIKPFYFRQYDHGSVVDAIFPKD 98
>SB_47367| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 914
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 171 NPRSLQLRRLTSTSPHTLSRPRTSRPDP 254
+PR + L+ S+SPHT R R+S DP
Sbjct: 687 SPRHVLLQEARSSSPHTSIRNRSSSSDP 714
>SB_27173| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1206
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 230 AKDEQTRPPRIVKVGIVQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 367
AKD + P VK H + +P ++P+ E + + + +K+ ++ +V
Sbjct: 823 AKDHRNNPRLAVKAQTYHHYLCIPAEKPIEEWRPSELGHKLDRLAEV 869
>SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 770
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = -3
Query: 421 GHVPQLLETDDVNTLLAGNIDDFLDFIENCFLLLVDW 311
G VP + +NTLL GN D F NC LL W
Sbjct: 723 GLVPYWTKLFGINTLLVGNARDSHLFCRNCSGLLPYW 759
>SB_24587| Best HMM Match : ResIII (HMM E-Value=0.82)
Length = 250
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/47 (25%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 230 AKDEQTRPPRIVKVGIVQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 367
A D + P VK H + +PT++P+ E + + + +K+ ++ +V
Sbjct: 177 AHDHRNNPRLAVKAQTYHHYLCIPTEKPIEEWRPSELGHKLDRLAEV 223
>SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)
Length = 1425
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = +2
Query: 233 KDEQTRPPRIVKVGIVQHSIAVPTDR-PVNEQKKAIFNKVKKIIDVAGQEGVN 388
+D T P V I VP + P N+ ++A+F++V K+ ++ GQ+ V+
Sbjct: 964 QDPPTDHPNNPSEEFVHKPILVPVMKSPRNDDERALFSRVSKVKNLWGQDLVD 1016
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 168 KNPRSLQLRRLTSTSPHTLSRPRTSRPDPR 257
K PR R S+SP SRP+ + P PR
Sbjct: 1047 KRPRHQSRERRPSSSPPRRSRPQRTSPSPR 1076
>SB_27649| Best HMM Match : ResIII (HMM E-Value=0.43)
Length = 802
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 230 AKDEQTRPPRIVKVGIVQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 367
A D + P +VK H + +P ++P+ E + + + +K+ + +V
Sbjct: 653 AHDHRNNPRLVVKAQTYHHYLCIPAEKPIEEWRPSELAHKLDHLAEV 699
>SB_25563| Best HMM Match : HEAT (HMM E-Value=2.5e-20)
Length = 1803
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +2
Query: 476 EDGPTTTFLRELAIKYAMVIVSSILERDEKHSDIL 580
+D FLR++ IK SS++++ KH D+L
Sbjct: 657 DDEDKLLFLRDIMIKLHRSKASSVMDQPGKHEDVL 691
>SB_59009| Best HMM Match : DEAD (HMM E-Value=0.87)
Length = 957
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/47 (23%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 230 AKDEQTRPPRIVKVGIVQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 367
A D + P +VK H + +P ++P+ E + + + +K+ ++ +V
Sbjct: 542 AHDHRNNPRLVVKAQTYHHYLFIPAEKPIEEGRPSELGHKLDRLAEV 588
>SB_41929| Best HMM Match : ResIII (HMM E-Value=1.5)
Length = 773
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 230 AKDEQTRPPRIVKVGIVQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 367
A D + P +VK H + +P ++P+ E + + + +K+ + +V
Sbjct: 624 AHDHRNNPRLVVKAQTYHHYLCIPAEKPIEEWRPSELAHKLDHLAEV 670
>SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1)
Length = 1101
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/47 (23%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 230 AKDEQTRPPRIVKVGIVQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 367
A D + P +VK H + +P ++P+ E + + + +K+ ++ +V
Sbjct: 686 AHDHRNNPRLVVKAQTYHHYLFIPAEKPIEEGRPSELGHKLDRLAEV 732
>SB_3895| Best HMM Match : ResIII (HMM E-Value=1.1)
Length = 1115
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/47 (23%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 230 AKDEQTRPPRIVKVGIVQHSIAVPTDRPVNEQKKA-IFNKVKKIIDV 367
A D + P +VK H + +P ++P+ E + + + +K+ ++ +V
Sbjct: 749 AHDHRNNPRLVVKAQTYHHYLFIPAEKPIEEGRPSELGHKLDRLAEV 795
>SB_24441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 608
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 290 IAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQELWNMP 421
IA+PT N ++I +++ ++ V GV+I C E W P
Sbjct: 107 IAIPTLLVCNA--RSISSRIDELDGVVAHNGVDIACITESWLTP 148
>SB_15536| Best HMM Match : MdcD (HMM E-Value=3.9)
Length = 146
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = -1
Query: 456 HHGCFSLVQNAKGMFHNSWKQMMLTPSW 373
HH CF ++ +A + Q ++PSW
Sbjct: 44 HHACFGIIPSALSVLVERGDQEAVSPSW 71
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,019,494
Number of Sequences: 59808
Number of extensions: 415303
Number of successful extensions: 1301
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1300
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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