Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10g09r
(696 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 402 e-113
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 402 e-113
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 402 e-113
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 400 e-112
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 400 e-112
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 385 e-107
At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly ide... 301 3e-82
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 159 2e-39
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 157 7e-39
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 156 2e-38
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 156 2e-38
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 156 2e-38
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 155 2e-38
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 154 5e-38
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 154 6e-38
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 153 1e-37
At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin... 84 7e-17
At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin... 81 5e-16
At1g70140.1 68414.m08071 formin homology 2 domain-containing pro... 36 0.034
At5g33320.1 68418.m03955 triose phosphate/phosphate translocator... 33 0.24
At3g62210.1 68416.m06989 expressed protein contains Pfam profile... 33 0.24
At2g40070.1 68415.m04923 expressed protein 33 0.24
At3g08670.1 68416.m01007 expressed protein 31 0.55
At1g01190.1 68414.m00032 cytochrome P450, putative similar to cy... 31 0.73
At1g29200.1 68414.m03573 hypothetical protein contains Pfam PF03... 30 1.3
At3g51540.1 68416.m05644 expressed protein mucin 5AC, Homo sapie... 29 2.2
At1g37130.1 68414.m04639 nitrate reductase 2 (NR2) identical to ... 29 3.9
At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein ... 28 5.1
At2g15020.1 68415.m01710 expressed protein and genefinder 28 5.1
At1g68080.1 68414.m07777 expressed protein 28 5.1
At1g62870.1 68414.m07099 expressed protein 28 5.1
At3g26855.1 68416.m03360 hypothetical protein 28 6.8
At3g11690.1 68416.m01433 expressed protein 27 9.0
At1g51660.1 68414.m05820 mitogen-activated protein kinase kinase... 27 9.0
At1g21090.1 68414.m02638 hydroxyproline-rich glycoprotein family... 27 9.0
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 402 bits (991), Expect = e-113
Identities = 179/209 (85%), Positives = 199/209 (95%)
Frame = -1
Query: 696 LIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVA 517
L+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAPVISAEKA+HEQLSVA
Sbjct: 230 LVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVA 289
Query: 516 EITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPT 337
EITN+ FEPA+ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ TIKTKRTIQFVDWCPT
Sbjct: 290 EITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPT 349
Query: 336 GFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYV 157
GFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYV
Sbjct: 350 GFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 409
Query: 156 GEGMEEGEFSEAREDLAALEKDYEEVGMD 70
GEGMEEGEFSEAREDLAALEKDYEEVG +
Sbjct: 410 GEGMEEGEFSEAREDLAALEKDYEEVGAE 438
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 402 bits (991), Expect = e-113
Identities = 179/209 (85%), Positives = 199/209 (95%)
Frame = -1
Query: 696 LIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVA 517
L+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAPVISAEKA+HEQLSVA
Sbjct: 230 LVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVA 289
Query: 516 EITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPT 337
EITN+ FEPA+ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ TIKTKRTIQFVDWCPT
Sbjct: 290 EITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPT 349
Query: 336 GFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYV 157
GFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYV
Sbjct: 350 GFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 409
Query: 156 GEGMEEGEFSEAREDLAALEKDYEEVGMD 70
GEGMEEGEFSEAREDLAALEKDYEEVG +
Sbjct: 410 GEGMEEGEFSEAREDLAALEKDYEEVGAE 438
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 402 bits (991), Expect = e-113
Identities = 179/209 (85%), Positives = 199/209 (95%)
Frame = -1
Query: 696 LIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVA 517
L+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAPVISAEKA+HEQLSVA
Sbjct: 230 LVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVA 289
Query: 516 EITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPT 337
EITN+ FEPA+ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ TIKTKRTIQFVDWCPT
Sbjct: 290 EITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPT 349
Query: 336 GFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYV 157
GFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE ++R+DHKFDLMYAKRAFVHWYV
Sbjct: 350 GFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAFVHWYV 409
Query: 156 GEGMEEGEFSEAREDLAALEKDYEEVGMD 70
GEGMEEGEFSEAREDLAALEKDYEEVG +
Sbjct: 410 GEGMEEGEFSEAREDLAALEKDYEEVGAE 438
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 400 bits (984), Expect = e-112
Identities = 179/209 (85%), Positives = 195/209 (93%)
Frame = -1
Query: 696 LIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVA 517
LI QI+SS+T SLRFDGA+NVD+TEFQTNLVPYPRIHF L +YAPVISA KAYHEQLSV
Sbjct: 230 LISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVP 289
Query: 516 EITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPT 337
EITNA FEPA+ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ TIKTKRT+QFVDWCPT
Sbjct: 290 EITNAVFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPT 349
Query: 336 GFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYV 157
GFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYV
Sbjct: 350 GFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYV 409
Query: 156 GEGMEEGEFSEAREDLAALEKDYEEVGMD 70
GEGMEEGEFSEAREDLAALEKDYEEVG +
Sbjct: 410 GEGMEEGEFSEAREDLAALEKDYEEVGAE 438
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 400 bits (984), Expect = e-112
Identities = 179/209 (85%), Positives = 195/209 (93%)
Frame = -1
Query: 696 LIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVA 517
LI QI+SS+T SLRFDGA+NVD+TEFQTNLVPYPRIHF L +YAPVISA KAYHEQLSV
Sbjct: 230 LISQIISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISAAKAYHEQLSVP 289
Query: 516 EITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPT 337
EITNA FEPA+ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ TIKTKRT+QFVDWCPT
Sbjct: 290 EITNAVFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTVQFVDWCPT 349
Query: 336 GFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYV 157
GFK GINYQPPTVVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMYAKRAFVHWYV
Sbjct: 350 GFKCGINYQPPTVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYAKRAFVHWYV 409
Query: 156 GEGMEEGEFSEAREDLAALEKDYEEVGMD 70
GEGMEEGEFSEAREDLAALEKDYEEVG +
Sbjct: 410 GEGMEEGEFSEAREDLAALEKDYEEVGAE 438
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 385 bits (948), Expect = e-107
Identities = 171/207 (82%), Positives = 189/207 (91%)
Frame = -1
Query: 696 LIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVA 517
LI Q +SS+T SLRFDGA+NVD+TEFQTNLVPYPRIHF L +YAPVIS+ KAYHEQ SV
Sbjct: 230 LISQTISSLTTSLRFDGAINVDITEFQTNLVPYPRIHFMLSSYAPVISSAKAYHEQFSVP 289
Query: 516 EITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPT 337
EIT + FEP+N M KCDPRHGKYMACC++YRGDVVPKDVN A+A IK KRTIQFVDWCPT
Sbjct: 290 EITTSVFEPSNMMAKCDPRHGKYMACCLMYRGDVVPKDVNTAVAAIKAKRTIQFVDWCPT 349
Query: 336 GFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYV 157
GFK GINYQPP+VVPGGDLAKVQRAVCM+SN TA+AE ++R+DHKFDLMY+KRAFVHWYV
Sbjct: 350 GFKCGINYQPPSVVPGGDLAKVQRAVCMISNNTAVAEVFSRIDHKFDLMYSKRAFVHWYV 409
Query: 156 GEGMEEGEFSEAREDLAALEKDYEEVG 76
GEGMEEGEFSEAREDLAALEKDYEEVG
Sbjct: 410 GEGMEEGEFSEAREDLAALEKDYEEVG 436
>At4g14960.1 68417.m02298 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 427
Score = 301 bits (739), Expect = 3e-82
Identities = 133/157 (84%), Positives = 149/157 (94%)
Frame = -1
Query: 696 LIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVA 517
L+ Q++SS+TASLRFDGALNVD+TEFQTNLVPYPRIHF L +YAPVISAEKA+HEQLSVA
Sbjct: 230 LVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVA 289
Query: 516 EITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPT 337
EITN+ FEPA+ M KCDPRHGKYMACC++YRGDVVPKDVNAA+ TIKTKRTIQFVDWCPT
Sbjct: 290 EITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPT 349
Query: 336 GFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAE 226
GFK GINYQPPTVVPGGDLAKVQRAVCM+SN+T++AE
Sbjct: 350 GFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAE 386
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 159 bits (386), Expect = 2e-39
Identities = 74/205 (36%), Positives = 119/205 (58%)
Frame = -1
Query: 696 LIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVA 517
LI +S +T SLRF G LN DL + NL+P+PR+HF +V +AP+ S + L+V
Sbjct: 229 LISATMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVP 288
Query: 516 EITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPT 337
E+T ++ N M DPRHG+Y+ ++RG + K+V+ I ++ K + FV+W P
Sbjct: 289 ELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQILNVQNKNSSYFVEWIPN 348
Query: 336 GFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYV 157
K + PPT ++ A + N+T+I E + R+ +F M+ ++AF+HWY
Sbjct: 349 NVKSSVCDIPPT--------GIKMASTFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 400
Query: 156 GEGMEEGEFSEAREDLAALEKDYEE 82
GEGM+E EF+EA ++ L +Y++
Sbjct: 401 GEGMDEMEFTEAESNMNDLVSEYQQ 425
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 157 bits (381), Expect = 7e-39
Identities = 74/205 (36%), Positives = 118/205 (57%)
Frame = -1
Query: 696 LIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVA 517
LI +S +T SLRF G LN DL + NL+P+PR+HF +V +AP+ S + L+V
Sbjct: 229 LISATMSGVTCSLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYISLTVP 288
Query: 516 EITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPT 337
E+T ++ N M DPRHG+Y+ ++RG + K+V+ I I+ K + FV+W P
Sbjct: 289 ELTQQMWDSKNMMCAADPRHGRYLTASAIFRGQMSTKEVDEQILNIQNKNSSYFVEWIPN 348
Query: 336 GFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYV 157
K + PP ++ A + N+T+I E + R+ +F M+ ++AF+HWY
Sbjct: 349 NVKSSVCDIPP--------KGLKMAATFVGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 400
Query: 156 GEGMEEGEFSEAREDLAALEKDYEE 82
GEGM+E EF+EA ++ L +Y++
Sbjct: 401 GEGMDEMEFTEAESNMNDLVAEYQQ 425
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 156 bits (378), Expect = 2e-38
Identities = 72/205 (35%), Positives = 118/205 (57%)
Frame = -1
Query: 696 LIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVA 517
LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S + L+V
Sbjct: 228 LISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVP 287
Query: 516 EITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPT 337
E+T ++ N M DPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P
Sbjct: 288 ELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPN 347
Query: 336 GFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYV 157
K + PPT ++ A + N+T+I E + R+ +F M+ ++AF+HWY
Sbjct: 348 NVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 399
Query: 156 GEGMEEGEFSEAREDLAALEKDYEE 82
GEGM+E EF+EA ++ L +Y++
Sbjct: 400 GEGMDEMEFTEAESNMNDLVSEYQQ 424
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 156 bits (378), Expect = 2e-38
Identities = 72/205 (35%), Positives = 118/205 (57%)
Frame = -1
Query: 696 LIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVA 517
LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S + L+V
Sbjct: 228 LISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRSLTVP 287
Query: 516 EITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPT 337
E+T ++ N M DPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P
Sbjct: 288 ELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPN 347
Query: 336 GFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYV 157
K + PPT ++ A + N+T+I E + R+ +F M+ ++AF+HWY
Sbjct: 348 NVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 399
Query: 156 GEGMEEGEFSEAREDLAALEKDYEE 82
GEGM+E EF+EA ++ L +Y++
Sbjct: 400 GEGMDEMEFTEAESNMNDLVSEYQQ 424
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 156 bits (378), Expect = 2e-38
Identities = 72/205 (35%), Positives = 118/205 (57%)
Frame = -1
Query: 696 LIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVA 517
LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S + L+V
Sbjct: 228 LISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRNLTVP 287
Query: 516 EITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPT 337
E+T ++ N M DPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P
Sbjct: 288 ELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMLNVQNKNSSYFVEWIPN 347
Query: 336 GFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYV 157
K + PPT ++ A + N+T+I E + R+ +F M+ ++AF+HWY
Sbjct: 348 NVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 399
Query: 156 GEGMEEGEFSEAREDLAALEKDYEE 82
GEGM+E EF+EA ++ L +Y++
Sbjct: 400 GEGMDEMEFTEAESNMNDLVSEYQQ 424
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 155 bits (377), Expect = 2e-38
Identities = 72/205 (35%), Positives = 118/205 (57%)
Frame = -1
Query: 696 LIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVA 517
LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S + L+V
Sbjct: 228 LISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVP 287
Query: 516 EITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPT 337
E+T ++ N M DPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P
Sbjct: 288 ELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPN 347
Query: 336 GFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYV 157
K + PPT ++ A + N+T+I E + R+ +F M+ ++AF+HWY
Sbjct: 348 NVKSTVCDIPPT--------GLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 399
Query: 156 GEGMEEGEFSEAREDLAALEKDYEE 82
GEGM+E EF+EA ++ L +Y++
Sbjct: 400 GEGMDEMEFTEAESNMNDLVSEYQQ 424
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 154 bits (374), Expect = 5e-38
Identities = 73/205 (35%), Positives = 118/205 (57%)
Frame = -1
Query: 696 LIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVA 517
LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S + LSV
Sbjct: 228 LISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYSALSVP 287
Query: 516 EITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPT 337
E+T ++ N M DPRHG+Y+ ++RG + K+V+ + I+ K + FV+W P
Sbjct: 288 ELTQQMWDAKNMMCAADPRHGRYLTASAVFRGKLSTKEVDEQMMNIQNKNSSYFVEWIPN 347
Query: 336 GFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYV 157
K + + P G ++ A + N+T+I E + R+ +F M+ ++AF+HWY
Sbjct: 348 NVKSSV----CDIAPKG----LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 399
Query: 156 GEGMEEGEFSEAREDLAALEKDYEE 82
GEGM+E EF+EA ++ L +Y++
Sbjct: 400 GEGMDEMEFTEAESNMNDLVAEYQQ 424
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 154 bits (373), Expect = 6e-38
Identities = 72/205 (35%), Positives = 118/205 (57%)
Frame = -1
Query: 696 LIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVA 517
LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S + LSV
Sbjct: 228 LISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYSALSVP 287
Query: 516 EITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPT 337
E+T ++ N M DPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P
Sbjct: 288 ELTQQMWDAKNMMCAADPRHGRYLTASAVFRGKMSTKEVDEQMMNVQNKNSSYFVEWIPN 347
Query: 336 GFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYV 157
K + + P G ++ A + N+T+I E + R+ +F M+ ++AF+HWY
Sbjct: 348 NVKSSV----CDIAPTG----LKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 399
Query: 156 GEGMEEGEFSEAREDLAALEKDYEE 82
GEGM+E EF+EA ++ L +Y++
Sbjct: 400 GEGMDEMEFTEAESNMNDLVAEYQQ 424
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 153 bits (371), Expect = 1e-37
Identities = 71/205 (34%), Positives = 117/205 (57%)
Frame = -1
Query: 696 LIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVA 517
LI +S +T LRF G LN DL + NL+P+PR+HF +V +AP+ S + L+V
Sbjct: 228 LISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVP 287
Query: 516 EITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPT 337
E+T ++ N M DPRHG+Y+ ++RG + K+V+ + ++ K + FV+W P
Sbjct: 288 ELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPN 347
Query: 336 GFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYV 157
K + + P G + A + N+T+I E + R+ +F M+ ++AF+HWY
Sbjct: 348 NVKSSV----CDIAPRG----LSMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYT 399
Query: 156 GEGMEEGEFSEAREDLAALEKDYEE 82
GEGM+E EF+EA ++ L +Y++
Sbjct: 400 GEGMDEMEFTEAESNMNDLVSEYQQ 424
>At5g05620.1 68418.m00612 tubulin gamma-2 chain / gamma-2 tubulin
(TUBG2) identical to SP|P38558 Tubulin gamma-2 chain
(Gamma-2 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 84.2 bits (199), Expect = 7e-17
Identities = 53/214 (24%), Positives = 109/214 (50%), Gaps = 10/214 (4%)
Frame = -1
Query: 696 LIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPV-ISAEKAYHEQLSV 520
L+ ++S+ T +LR+ G +N DL +L+P PR HF + Y P+ + + + +V
Sbjct: 231 LVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTV 290
Query: 519 AEITNACFEPANQMVKCDPRH-----GKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQF 355
++ + N MV R+ KY++ + +G+V P V+ ++ I+ ++ + F
Sbjct: 291 LDVMRRLLQTKNIMVSSYARNKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNF 350
Query: 354 VDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRA 175
+DW P +V ++ + P V ++ + ML++ T+I ++R ++D + K+A
Sbjct: 351 IDWGPASIQVALSKKSPYVQTSHRVSGL-----MLASHTSIRHLFSRCLSQYDKLRKKQA 405
Query: 174 FVHWYVGEGM----EEGEFSEAREDLAALEKDYE 85
F+ Y M + EF E+R+ + +L +Y+
Sbjct: 406 FLDNYRKFPMFADNDLSEFDESRDIIESLVDEYK 439
>At3g61650.1 68416.m06909 tubulin gamma-1 chain / gamma-1 tubulin
(TUBG1) identical to SP|P38557 Tubulin gamma-1 chain
(Gamma-1 tubulin) {Arabidopsis thaliana}
Length = 474
Score = 81.4 bits (192), Expect = 5e-16
Identities = 51/214 (23%), Positives = 109/214 (50%), Gaps = 10/214 (4%)
Frame = -1
Query: 696 LIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPV-ISAEKAYHEQLSV 520
L+ ++S+ T +LR+ G +N DL +L+P PR HF + Y P+ + + + +V
Sbjct: 231 LVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTV 290
Query: 519 AEITNACFEPANQMVKCDPRH-----GKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQF 355
++ + N MV R+ KY++ + +G+V P V+ ++ I+ ++ + F
Sbjct: 291 LDVMRRLLQTKNIMVSSYARNKEASQAKYISILNIIQGEVDPTQVHESLQRIRERKLVNF 350
Query: 354 VDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRA 175
++W P +V ++ + P V ++ + ML++ T+I +++ ++D + K+A
Sbjct: 351 IEWGPASIQVALSKKSPYVQTAHRVSGL-----MLASHTSIRHLFSKCLSQYDKLRKKQA 405
Query: 174 FVHWYVGEGM----EEGEFSEAREDLAALEKDYE 85
F+ Y M + EF E+R+ + +L +Y+
Sbjct: 406 FLDNYRKFPMFADNDLSEFDESRDIIESLVDEYK 439
>At1g70140.1 68414.m08071 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 760
Score = 35.5 bits (78), Expect = 0.034
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -3
Query: 676 LDHCFFEIRRRSECGPHRVPD*LGALPPYPLPTGHVRASHLCREG 542
L C RRR GP RV + L PP P+ + V + L REG
Sbjct: 97 LQRCIIARRRRDRVGPVRVENTLPPYPPPPMTSAAVTTTTLAREG 141
>At5g33320.1 68418.m03955 triose phosphate/phosphate translocator,
putative similar to SWISS-PROT:P52178 triose
phosphate/phosphate translocator [Cauliflower] {Brassica
oleracea}
Length = 408
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -2
Query: 215 ALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTW 108
A ++S + +P+V+S S R WR SS P+R W
Sbjct: 31 AASSSDLNVSPNVVSIPSLSRRSWRLASSDSPLRAW 66
>At3g62210.1 68416.m06989 expressed protein contains Pfam profile
PF04396: Protein of unknown function, DUF537; expression
supported by MPSS
Length = 279
Score = 32.7 bits (71), Expect = 0.24
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 391 GRVHILGY-DVTTVQHTASHVLAMTGVAFHHLVGGLE 498
GRV I Y D + + H H L TG+ HH+ G++
Sbjct: 59 GRVSISAYGDTSGIPHVIQHALNSTGIELHHVPAGVK 95
>At2g40070.1 68415.m04923 expressed protein
Length = 607
Score = 32.7 bits (71), Expect = 0.24
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Frame = -2
Query: 599 TPVSTS-HWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTV 423
TP+S S S +R + +PT ++ S S T S+P T +A P ++T L+ T
Sbjct: 236 TPMSRSTSLSSSRLTPTASKPTTSTARSAGSVTR-STPSTTTKSAGPSRSTTPLSRS-TA 293
Query: 422 VTSYPRM*TRPSLPSKPSVLSNSSTGVQPV-SRSVSTTSHPP 300
+S P +RP+LP ++ +S+ +P+ S S +TT+ P
Sbjct: 294 RSSTPT--SRPTLPPSKTISRSSTPTRRPIASASAATTTANP 333
>At3g08670.1 68416.m01007 expressed protein
Length = 567
Score = 31.5 bits (68), Expect = 0.55
Identities = 31/105 (29%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Frame = -2
Query: 632 TSPSSRLTWCLTPVSTSHWSRTRQSSLPR--RPTMNSFPSPRSQTHASSPPTRW*NATPV 459
+SPSSR + P + + S +SS P RP +S +++ SS P +TP
Sbjct: 194 SSPSSRSSSSARPSTPTRTSSASRSSTPSRIRPGSSSSSMDKARPSLSSRP-----STPT 248
Query: 458 MASTWLAVCCTVVTSYPRM*TRPSLPSK--PSVLSNSSTGVQPVS 330
A ++ S P +RPS P++ PS S S+T +S
Sbjct: 249 SRPQLSASSPNIIASRPN--SRPSTPTRRSPSSTSLSATSGPTIS 291
>At1g01190.1 68414.m00032 cytochrome P450, putative similar to
cytochrome P450 SP:O48927 from [Glycine max]
Length = 535
Score = 31.1 bits (67), Expect = 0.73
Identities = 18/47 (38%), Positives = 27/47 (57%)
Frame = -1
Query: 642 LNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNA 502
+++D NL+P PR FPLV + S+ A+ SVAE++NA
Sbjct: 62 ISLDYNRKYKNLIPGPR-GFPLVGSMSLRSSHVAHQRIASVAEMSNA 107
>At1g29200.1 68414.m03573 hypothetical protein contains Pfam
PF03138: Plant protein family. The function of this
family of plant proteins is unknown;
Length = 698
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 310 LVVDTDLETGWTPVDELDSTLGFDGSDGRVHILGY 414
LV DT+L TPVD ++ L G VH+ GY
Sbjct: 360 LVTDTELVKEATPVDYIEHVLPLLKKYGMVHLFGY 394
>At3g51540.1 68416.m05644 expressed protein mucin 5AC, Homo sapiens,
PIR:S53363
Length = 438
Score = 29.5 bits (63), Expect = 2.2
Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 11/121 (9%)
Frame = -2
Query: 632 TSPSSRLTWCLTPVSTSHWSRTRQSSLPRRPTMN------SFPSPRSQTHASSPP----T 483
+ PSSR T + + S+ R SS+P++ T S SP+ S P T
Sbjct: 107 SDPSSRPTRSGSTIRPSNIPTIRSSSVPKKTTTTQIQASASVSSPKRTVSRSLTPSSRKT 166
Query: 482 RW*NATPVMASTWLAVCCTVVTSYPRM*TRPSLP-SKPSVLSNSSTGVQPVSRSVSTTSH 306
+TP ST + + T+ +R P +KP + +N+S+ RS S TS
Sbjct: 167 PSPTSTPSRISTTTSTTPSFKTAGDAQRSRSLTPRAKPQIAANASSRTN--VRSSSVTSR 224
Query: 305 P 303
P
Sbjct: 225 P 225
>At1g37130.1 68414.m04639 nitrate reductase 2 (NR2) identical to
SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1)
(NR2) {Arabidopsis thaliana}
Length = 917
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 87 RNPSRGQPGPHGLRRTLPPPYPHRRTSARKHAWRT*GRT 203
R +R +PG +G+ R+ PP P R S + H +T +T
Sbjct: 8 RQYARLEPGLNGVVRSYKPPVPGRSDSPKAHQNQTTNQT 46
>At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 587
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = -1
Query: 426 RGDVVPKDVNAAIATIKTKRTIQFVDWCPT-GFKVGINYQPPTVVPGGD 283
+G V D A T TK+ + DW P+ FK PP ++P D
Sbjct: 308 QGVAVSSDKGAEANTTSTKKKVSSDDWEPSEPFKASFTI-PPYILPSSD 355
>At2g15020.1 68415.m01710 expressed protein and genefinder
Length = 526
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = -1
Query: 648 GALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVK 472
G N+ L +F ++L+P + F T A + K Y LS+ N+ E N++VK
Sbjct: 212 GLGNLGLKQFSSSLMPRHSLGFSYATEAHGLWILKGYFPILSMNVTNNSSNEVHNKIVK 270
>At1g68080.1 68414.m07777 expressed protein
Length = 383
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 352 DELDSTLGFDGSDGRVHILGYDVTTVQ 432
D + +GFD R+H+LG+DV ++Q
Sbjct: 211 DGSNQNIGFDVCVARLHLLGFDVHSLQ 237
>At1g62870.1 68414.m07099 expressed protein
Length = 796
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = -2
Query: 617 RLTWCLTPVSTSHWSRTRQSSLPRR--PTMNSFPSPRSQTHASSPP 486
R + C S S+ SRT L R P NS P P S S PP
Sbjct: 80 RCSLCDAVFSASNPSRTASEHLKRGTCPNFNSLPKPISTISPSPPP 125
>At3g26855.1 68416.m03360 hypothetical protein
Length = 163
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 194 SCTPSVLSCTGTSVRVWRRESSPK 123
SC P +LS + VR W +SSPK
Sbjct: 114 SCNPMLLSTFPSIVRAWDGKSSPK 137
>At3g11690.1 68416.m01433 expressed protein
Length = 252
Score = 27.5 bits (58), Expect = 9.0
Identities = 20/60 (33%), Positives = 28/60 (46%)
Frame = -2
Query: 599 TPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVMASTWLAVCCTVV 420
TP S+ S RQ L R +++S PSPR+ S+P T A+ W C +V
Sbjct: 21 TPSSSPSRSNRRQPLLQR--SLSS-PSPRASCGGSTPAEFCGGTTASCAAVWCCCPCGLV 77
>At1g51660.1 68414.m05820 mitogen-activated protein kinase kinase
(MAPKK), putative (MKK4) identical to MAP kinase kinase
4 [Arabidopsis thaliana] gi|3219271|dbj|BAA28830
gi_13265419
Length = 366
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Frame = +3
Query: 24 HWLSTLRLPHPRLQRSPCRLLRNPS--RGQPG----PHGLRRTLPPPYPHRRTSA 170
H++S P +RS +LL++P R P P L + LPPP P +S+
Sbjct: 309 HFISCCLQREPGKRRSAMQLLQHPFILRASPSQNRSPQNLHQLLPPPRPLSSSSS 363
>At1g21090.1 68414.m02638 hydroxyproline-rich glycoprotein family
protein
Length = 242
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = -2
Query: 632 TSPSSR-LTWCLTPVSTSHWSRTRQSSLPRRPTMNSFPSPRSQTHASSPPTRW*NATPVM 456
T P+S TW + + ++S T +SLP+ +N + + A+SPP++ PV
Sbjct: 82 TKPNSTSFTWYPSRTGSYYFSFTNNTSLPKTCQLNQKLTVQVILAAASPPSQPPATAPVP 141
Query: 455 AS 450
S
Sbjct: 142 VS 143
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,274,732
Number of Sequences: 28952
Number of extensions: 388069
Number of successful extensions: 1527
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1513
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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