Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g08r
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces pom...    28   1.8  
SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase Agn1|Schizo...    27   3.1  
SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1 |Schiz...    27   3.1  
SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces pombe...    26   5.4  

>SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 336

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 548 GDVDVYLLNDRFVPIFDSKITVEF 477
           GDVDV +   + + IFD KI +EF
Sbjct: 52  GDVDVSMRKRKVITIFDLKIQMEF 75


>SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase
           Agn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 771 IVRFASDVIEGSDRILSTKPG*LVHDGRVVLAT 673
           I+   +D IEG  R  + KP  L +DG+V ++T
Sbjct: 94  IISADADFIEGVVRRFADKPNQLYYDGKVFVST 126


>SPAC1805.09c |fmt1||methionyl-tRNA formyltransferase Fmt1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 378 PKIDLNVLLLGTQSFRCCIVR 440
           PKI LNV+ LGT  F   I+R
Sbjct: 3   PKIPLNVIFLGTDEFSIPILR 23


>SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -3

Query: 176 DTVVLFLWLEAASVDGHFEDNGFILAQPYIRVKYTSKSNMKPQKLE--KSITFQYYV 12
           D   + ++L+    D +FE  GFI    Y    Y+S++ +   +LE  +++ F  ++
Sbjct: 93  DICNVVVYLKERFKDTNFEARGFIAHDLYSEEMYSSRNRLSNMELEVLRALNFDTHI 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,382,752
Number of Sequences: 5004
Number of extensions: 76135
Number of successful extensions: 199
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)