Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g08r
         (790 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0772 - 5755371-5756654,5757808-5757834                           30   1.8  
04_03_0471 - 16292916-16293209,16294558-16294803,16297557-162976...    30   2.4  
09_02_0111 - 4386913-4387295,4388000-4388078,4389553-4390659           29   4.2  
05_01_0595 + 5344721-5345249,5349183-5349264,5349813-5350507,535...    29   5.6  
01_01_1009 + 7992040-7992287,7992747-7993144,7993301-7993441,799...    29   5.6  
06_02_0186 + 12787866-12788055,12788575-12788642,12788864-127890...    28   9.7  

>02_01_0772 - 5755371-5756654,5757808-5757834
          Length = 436

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -1

Query: 718 KARLIGTRWARCIGNSMMYG-RHRLGLA 638
           K RL+  RW+R +  +  YG R RLGLA
Sbjct: 99  KLRLVCRRWSRLLAGNYFYGLRRRLGLA 126


>04_03_0471 -
           16292916-16293209,16294558-16294803,16297557-16297692,
           16297765-16297983,16298194-16298572,16298967-16299225,
           16300044-16300114,16300604-16300625
          Length = 541

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = -3

Query: 461 LVPIKTESYDAAAEALSSKKQNIEIDLWDE---PNLDEIFLRFSLK 333
           L+ I  ++YDA A    S+K N  I  WDE   P + E   +F +K
Sbjct: 291 LLVIMDDTYDAHATIEESRKLNEAIQRWDESAIPRVPEYLKKFYIK 336


>09_02_0111 - 4386913-4387295,4388000-4388078,4389553-4390659
          Length = 522

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 18/60 (30%), Positives = 28/60 (46%)
 Frame = +2

Query: 143 PLLTRETIPPYQPLYPRCTLLDYRLFFV*PLSHVSEFEEHLNL*PISVALERCNYMGLRL 322
           P + + T+P + PL    +     L FV  LSH S ++ H  L  + +   +C Y   RL
Sbjct: 53  PEMEKLTVPVFHPLTASSSSPRLSLDFVPDLSHFSLYDSHHGL--LLLRHHKCEYFNPRL 110


>05_01_0595 + 5344721-5345249,5349183-5349264,5349813-5350507,
            5350583-5350839,5350934-5351615,5351689-5351892,
            5351981-5352715,5352799-5353181
          Length = 1188

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/44 (27%), Positives = 14/44 (31%)
 Frame = -3

Query: 758  QAMSLKVQTEYYRQSQADWYTMGALYWQLNDVWQAPSWSGIEHG 627
            QA      T  Y   +  WY      WQ    W   SW   + G
Sbjct: 1124 QASDYPATTWVYEWQEPQWYAQLYTQWQTTSSWTGQSWEEYKAG 1167


>01_01_1009 + 7992040-7992287,7992747-7993144,7993301-7993441,
            7993517-7993773,7993868-7994169,7994342-7994580,
            7994654-7994857,7994946-7995680,7995764-7996155
          Length = 971

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/44 (27%), Positives = 14/44 (31%)
 Frame = -3

Query: 758  QAMSLKVQTEYYRQSQADWYTMGALYWQLNDVWQAPSWSGIEHG 627
            QA      T  Y   +  WY      WQ    W   SW   + G
Sbjct: 904  QASDYPATTWVYEWQEPQWYAQLYAQWQTTSSWTGQSWEEYKAG 947


>06_02_0186 +
           12787866-12788055,12788575-12788642,12788864-12789007,
           12789112-12789268,12789344-12789366,12789487-12789495,
           12789694-12790108,12790449-12790652,12790741-12791201,
           12791206-12791476,12791560-12791951
          Length = 777

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/45 (24%), Positives = 15/45 (33%)
 Frame = -3

Query: 761 SQAMSLKVQTEYYRQSQADWYTMGALYWQLNDVWQAPSWSGIEHG 627
           +Q+      T  Y   +  WY      WQ    W   SW   + G
Sbjct: 709 TQSSDYPATTWVYEWQEPQWYAQLYAQWQTTSSWTGQSWEEYKAG 753


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,675,592
Number of Sequences: 37544
Number of extensions: 451043
Number of successful extensions: 1105
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)