Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g08r
         (790 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_979| Best HMM Match : No HMM Matches (HMM E-Value=.)                67   2e-11
SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)            32   0.61 
SB_30010| Best HMM Match : SMC_hinge (HMM E-Value=2)                   31   1.4  
SB_50105| Best HMM Match : fn3 (HMM E-Value=1.5e-28)                   29   3.2  
SB_9299| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.3  
SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_45565| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.7  
SB_32997| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  

>SB_979| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 50/179 (27%), Positives = 80/179 (44%), Gaps = 9/179 (5%)
 Frame = -3

Query: 617 KMLHYFANTFFAPVLVSPRLLLSGDVDVYLLNDRFVPIFDSKITVEFFNWSSLVPIKTES 438
           ++LHY+A  FFAPV +S      G + VY+++DR  PI D  + V    WSSL P+ T  
Sbjct: 467 QVLHYYAKDFFAPV-ISSAYEEDGKLKVYIISDRDKPITDGLLLVSMREWSSLTPLTTWK 525

Query: 437 YDAAAEALSSKKQNIEIDLWDE-------PNLDEIFLRFSL--KSDGVASSPYNYIFPKP 285
              + +  SS  +++   L DE       P+    F+  +    S  ++ +P N  F  P
Sbjct: 526 VKFSVKPQSS--EHVWDKLIDELVKQSSCPSRAHCFITMTTTQTSTKISIAPTNTFFLSP 583

Query: 284 LKSVKGLNVPRIQIHVTKVKQRRVDNLTEYNVDIRVDTVVLFLWLEAASVDGHFEDNGF 108
             +  G+  P     + K+      + T     +       F+WL +  + G F DNGF
Sbjct: 584 WSAAVGMKDP-----LLKISDIHRSSKTGIAFTVSAQAPAAFVWLASGIMRGRFSDNGF 637


>SB_6866| Best HMM Match : Peptidase_C48 (HMM E-Value=0.045)
          Length = 1050

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
 Frame = -3

Query: 539 DVYLLNDRFVPIFDSKIT--VEFFNWSSLVPIKTESYDAAAEALSSKKQNIEIDLWDEPN 366
           D YL  +R + ++D +    ++   W  L P  + S  +AA +L +K  +IE   W    
Sbjct: 456 DTYLTENRQLNMYDYRENDGIDCAVWPHLYPYHSWSRRSAATSLDTKTFSIEYWRWHHRF 515

Query: 365 LDEIFLRFSLKSDGVASSPYNYIFP 291
           + +   ++   +  +  SP+ + FP
Sbjct: 516 VLDALQQYGYPTLFITISPFEWTFP 540


>SB_30010| Best HMM Match : SMC_hinge (HMM E-Value=2)
          Length = 971

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -3

Query: 758 QAMSLKVQTEYYRQSQADWYTMGALYWQLNDVWQAPSWSGIEH 630
           Q  ++K   + YR++QADW+    + W ++ V +  S    EH
Sbjct: 646 QDWAMKYLPQKYRETQADWFGKRGISWHISVVIRRSSTGIAEH 688


>SB_50105| Best HMM Match : fn3 (HMM E-Value=1.5e-28)
          Length = 721

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 245 IHVTKVKQRRVDNLTEYNVDIRVDTVVLFLWLEAASVDGH 126
           ++VT +K+  +D  ++  VDI   T +   W   +S DG+
Sbjct: 287 LYVTTIKEAPIDVPSDVKVDIYGSTTLSATWARVSSADGY 326


>SB_9299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1135

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -3

Query: 758 QAMSLKVQTEYYRQSQADWYTMGALYWQLNDVWQAPSWSGIEH 630
           Q  ++K   + YR++QADW+    + W ++ V +  +   + H
Sbjct: 632 QDWAMKFLPQKYRETQADWFGKRGISWHISVVIRRNADGSLRH 674


>SB_25727| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1758

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = -3

Query: 647  WSGIEHGGRWKMLHYF--ANTFFAPVLVSPRLL 555
            W G  HG   ++LH+   A +FF+P+LV P LL
Sbjct: 1148 WPG--HGPYMQLLHFTFAAGSFFSPLLVKPFLL 1178


>SB_45565| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 123

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 371 PNLDEIFLRFSLKSDGVASSPYNYIFPKPLKSVK 270
           P   E+ + +  +S+G+  SPY+    KP++SV+
Sbjct: 30  PASTELLMAYRAQSEGLGKSPYHRNTDKPVRSVR 63


>SB_32997| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 553

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
 Frame = -3

Query: 347 RFSLKSDGVASSPYNYIFPKPLK--------SVKGLNVPRIQIHVTKVKQRRVDNLTEY 195
           R+++K   V  +PY  I  + +K        S +G  VP+I+ H  ++   +VDNL ++
Sbjct: 215 RYTMKELQVLHAPYKPISLRQIKRARAHANKSDQGSEVPKIENHRIRLDTNKVDNLIDF 273


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,444,340
Number of Sequences: 59808
Number of extensions: 538930
Number of successful extensions: 1278
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1272
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)