Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner10g08r
(790 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78540-2|CAB01737.1| 900|Caenorhabditis elegans Hypothetical pr... 93 3e-19
Z79600-5|CAB01878.2| 412|Caenorhabditis elegans Hypothetical pr... 31 1.2
AF520567-1|AAM75345.1| 412|Caenorhabditis elegans intraflagella... 31 1.2
Z81056-8|CAB02907.2| 307|Caenorhabditis elegans Hypothetical pr... 28 8.8
U21308-9|AAW57822.1| 787|Caenorhabditis elegans Nfi (nuclear fa... 28 8.8
U21308-7|AAW57823.1| 823|Caenorhabditis elegans Nfi (nuclear fa... 28 8.8
>Z78540-2|CAB01737.1| 900|Caenorhabditis elegans Hypothetical protein
C33G3.4 protein.
Length = 900
Score = 92.7 bits (220), Expect = 3e-19
Identities = 75/253 (29%), Positives = 117/253 (46%), Gaps = 10/253 (3%)
Frame = -3
Query: 758 QAMSLKVQTEYYRQ------SQADWYTMGALYWQLNDVWQAPSWSGIEHGGRWKMLHYFA 597
Q+++LK QT +YR+ ++ TM A+YWQLNDVW AP+WS I+ WKM HY A
Sbjct: 645 QSIALKTQTLHYRRFRNTTTNEGLGNTMCAMYWQLNDVWAAPTWSTIDFEQNWKMAHYEA 704
Query: 596 NTFFAPVLV-SPRLLLSGDVDVYLLNDRFVPIFDSKITVEFFNW-SSLVPIKTESYDA-A 426
FF+ V V S ++ V+LLND + + + V+ +W + L PI T + +
Sbjct: 705 RRFFSNVAVYSFADETDFNLKVFLLNDNPYLLHNITVNVQMLSWGNGLDPILTNEFHIDS 764
Query: 425 AEALSSKKQNIEIDLWDEPNLDEIFLRFSLKSDGVASSPYNYIFPKPLKSVKGLNVPRIQ 246
A SS+ I L E +L + + P L V +Q
Sbjct: 765 VPAGSSEVLKTGITFSKITELSEYLYVSTLYDSSGVKIHEDVLVPDFLFEVDFNTFGDVQ 824
Query: 245 IHVTKVKQRRVDNLTEYNVDIRVDTVVLFLWLEAAS-VDGHFEDNGFILAQPYIRVKYTS 69
I +R+D T Y++ I D V F W+ G F DNGF + Q +++ +
Sbjct: 825 IS----DVQRIDEKT-YDLTITTDRVSPFTWITCKKPFTGWFSDNGFHMIQRLRKIRLIA 879
Query: 68 KSNMKPQKLEKSI 30
K + +K + ++
Sbjct: 880 KFEVDLEKSDFTV 892
>Z79600-5|CAB01878.2| 412|Caenorhabditis elegans Hypothetical
protein F59C6.7 protein.
Length = 412
Score = 30.7 bits (66), Expect = 1.2
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
Frame = -3
Query: 551 SGDVDVYLLNDRFVPIFDSKITVEFFNWSSLVPIKTESYDAAAEALSSKKQNIEI----- 387
+G+ +++LN + D+ + F W ++P K E D A + N +I
Sbjct: 134 AGENVIFILNS----LADASLVHVGFQWQKMIPPKEEDEDTAVDEQDEDDDNDDIVEEPM 189
Query: 386 DLWDEPNLDEIFLRFSLKSDGVASSPYNYIFPKPLKSVKGLNVPRI 249
+ D+ + D + + LK+ G+A+ N PL+SV N I
Sbjct: 190 NFLDDDDDDNV-IEIDLKAQGLATESKN-----PLQSVLQSNTDAI 229
>AF520567-1|AAM75345.1| 412|Caenorhabditis elegans intraflagellar
transport proteinCHE-13 protein.
Length = 412
Score = 30.7 bits (66), Expect = 1.2
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
Frame = -3
Query: 551 SGDVDVYLLNDRFVPIFDSKITVEFFNWSSLVPIKTESYDAAAEALSSKKQNIEI----- 387
+G+ +++LN + D+ + F W ++P K E D A + N +I
Sbjct: 134 AGENVIFILNS----LADASLVHVGFQWQKMIPPKEEDEDTAVDEQDEDDDNDDIVEEPM 189
Query: 386 DLWDEPNLDEIFLRFSLKSDGVASSPYNYIFPKPLKSVKGLNVPRI 249
+ D+ + D + + LK+ G+A+ N PL+SV N I
Sbjct: 190 NFLDDDDDDNV-IEIDLKAQGLATESKN-----PLQSVLQSNTDAI 229
>Z81056-8|CAB02907.2| 307|Caenorhabditis elegans Hypothetical
protein F09F3.12 protein.
Length = 307
Score = 27.9 bits (59), Expect = 8.8
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = -1
Query: 589 FSRLF*YPLVFCYQGMLMFIF*TTDSYRFSTQKLQWSSSIGLVWYLSKPS 440
F F + + C+ G +MF F + ++ +K S+ LV +SKPS
Sbjct: 255 FCLTFSFASIHCFDGFVMFYFHSEVHPKWMWRKAMRKKSLILVVAMSKPS 304
>U21308-9|AAW57822.1| 787|Caenorhabditis elegans Nfi (nuclear
factor i) family protein1, isoform b protein.
Length = 787
Score = 27.9 bits (59), Expect = 8.8
Identities = 36/165 (21%), Positives = 68/165 (41%), Gaps = 7/165 (4%)
Frame = -3
Query: 602 FANTFFAPVLVSPRLLLSGDVDVYLLNDR--FVPIFDSKITVEFFNWSSLVPIKTESYDA 429
++N F +P VSP+ Y D FV + +NW L K +
Sbjct: 8 WSNQFNSPEAVSPKANGIKCFSPYSQEDMGPFVEQLLPFVRASAYNWFHLQAAKRRHFKE 67
Query: 428 AAEALSSKKQNIEIDLWDEPNLDEIFLRFSLKSDG-VASSPYNYIFPKPLKSVKGLNVPR 252
+ + + ++N ++ DE+ ++++ + G + N + ++ G +
Sbjct: 68 FDKKMCASEENAKLAELQNDR-DELKVKWASRLLGKIKKDIQNDDKEAFISAINGSEPNK 126
Query: 251 IQIHVT--KVKQRRVDNLTEYNVDIRVD--TVVLFLWLEAASVDG 129
I V K K RR+D L + + R+D T++LF + S DG
Sbjct: 127 CIISVADQKGKMRRIDCLRQADKVWRLDLVTIILFKGIPLESTDG 171
>U21308-7|AAW57823.1| 823|Caenorhabditis elegans Nfi (nuclear
factor i) family protein1, isoform c protein.
Length = 823
Score = 27.9 bits (59), Expect = 8.8
Identities = 36/165 (21%), Positives = 68/165 (41%), Gaps = 7/165 (4%)
Frame = -3
Query: 602 FANTFFAPVLVSPRLLLSGDVDVYLLNDR--FVPIFDSKITVEFFNWSSLVPIKTESYDA 429
++N F +P VSP+ Y D FV + +NW L K +
Sbjct: 44 WSNQFNSPEAVSPKANGIKCFSPYSQEDMGPFVEQLLPFVRASAYNWFHLQAAKRRHFKE 103
Query: 428 AAEALSSKKQNIEIDLWDEPNLDEIFLRFSLKSDG-VASSPYNYIFPKPLKSVKGLNVPR 252
+ + + ++N ++ DE+ ++++ + G + N + ++ G +
Sbjct: 104 FDKKMCASEENAKLAELQNDR-DELKVKWASRLLGKIKKDIQNDDKEAFISAINGSEPNK 162
Query: 251 IQIHVT--KVKQRRVDNLTEYNVDIRVD--TVVLFLWLEAASVDG 129
I V K K RR+D L + + R+D T++LF + S DG
Sbjct: 163 CIISVADQKGKMRRIDCLRQADKVWRLDLVTIILFKGIPLESTDG 207
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,312,186
Number of Sequences: 27780
Number of extensions: 409623
Number of successful extensions: 1140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1137
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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