Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g08r
         (790 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   2.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   4.3  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   4.3  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
 Frame = -3

Query: 215 VDNLTEYNVDIRVDTVVLFLWLEAASVDGHFEDNGFILAQPYIRV--KYTSKSNMKPQKL 42
           VDN T Y  D+R      F W  + +  G  +    +L + ++ V   Y S  N++ +K 
Sbjct: 398 VDNTTIYKYDVRDGCRTPFQWDNSINA-GFSKIAENLLEKNWLPVHTSYKSGLNLEQEKK 456

Query: 41  EKSITFQYYVN 9
           +    +  Y N
Sbjct: 457 DSISHYHLYTN 467


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = -3

Query: 716 SQADWYTMGALYWQLNDVWQAPSWS 642
           S +D ++MG + W++    + P W+
Sbjct: 817 SASDVWSMGIVCWEVMSYGERPYWN 841


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 395 IEIDLWDEPNLDEIFLRFSLKSDGVASSPY-NYIFPKPLKSVKGLNV 258
           + I+  D+PN+D I +++ L   G+        I    + ++KG+N+
Sbjct: 250 VAINKIDKPNIDIIKVQYELAKHGIVIEELGGEIQCVKISALKGINL 296


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,373
Number of Sequences: 438
Number of extensions: 5049
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24882285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)