Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g08r
         (790 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g34960.1 68418.m04125 hypothetical protein includes At5g34960...    29   2.7  
At1g64540.1 68414.m07316 F-box family protein contains F-box dom...    29   2.7  
At1g16310.1 68414.m01952 cation efflux family protein contains c...    29   3.5  
At2g44250.1 68415.m05506 expressed protein   contains Pfam profi...    29   4.6  
At5g45160.1 68418.m05544 root hair defective 3 GTP-binding (RHD3...    28   6.1  
At1g31730.1 68414.m03893 epsilon-adaptin, putative similar to SP...    28   6.1  
At4g39290.1 68417.m05564 kelch repeat-containing F-box family pr...    28   8.1  

>At5g34960.1 68418.m04125 hypothetical protein includes At5g34960,
           At2g14450, At1g35920
          Length = 1033

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
 Frame = -3

Query: 506 IFDSK-ITVEFFNWSSLVPIKTESYDAAAEALSSKKQNIEIDLWDEPNLDEIFLRFSLKS 330
           + DSK +TV     +S+VP++TE+  A   A    KQ ++ ++        + +  +  S
Sbjct: 474 VADSKEVTVPTKLKTSMVPVETENDQALVPATVVVKQEVKKEMARNMAAVRVKVEKNKMS 533

Query: 329 DGVASSPYNYIFPKPLKSVKGLNV 258
           + V S   +Y+FP  L+     NV
Sbjct: 534 ELVKSDFTDYLFPNELEDSATDNV 557


>At1g64540.1 68414.m07316 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 444

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -3

Query: 218 RVDNLTEYNVDIRVDTVVLFLWLEAASVDGHFEDNGFILAQPY 90
           R+D+L E  +D+R       LW+   S D  +ED  F + +PY
Sbjct: 240 RMDSLVEARLDLR-------LWVSTDSYDSDYEDKDFDVYRPY 275


>At1g16310.1 68414.m01952 cation efflux family protein contains
           cation efflux family protein domain, Pfam:PF01545
          Length = 428

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -3

Query: 680 WQLN-DVWQAPSWSGIEHGGRWKMLHYF 600
           W+LN D +Q PS +G  H GR +   YF
Sbjct: 61  WRLNLDAFQLPSSTGGRHDGRTRFSRYF 88


>At2g44250.1 68415.m05506 expressed protein   contains Pfam profile
           PF03080: Arabidopsis proteins of unknown function
          Length = 409

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = -3

Query: 131 GHFEDNGFILAQPYIRVKYTSKSNMK----PQKLEKSIT 27
           GHF + GF  A     ++Y  KSN      PQ LE S+T
Sbjct: 340 GHFAEEGFKKAAYINNIEYIDKSNHPIKPFPQNLEASVT 378


>At5g45160.1 68418.m05544 root hair defective 3 GTP-binding (RHD3)
           family protein contains Pfam profile: PF05879 root hair
           defective 3 GTP-binding protein    (RHD3) family
          Length = 834

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 36/122 (29%), Positives = 50/122 (40%), Gaps = 9/122 (7%)
 Frame = -3

Query: 527 LNDRFVPIFDSKITVEFFNWSSLVPIKTESYDAAAEALSSKKQNIEIDLWDEPNLDEIFL 348
           + DRF  +F          W+    I+  + DA AEALS       I L + P+  E  L
Sbjct: 546 MKDRFSTVFSHDKDSMPRVWTGKEDIRAITKDARAEALSLLSVMTAIRLDERPDNIESTL 605

Query: 347 RFSLKSDGVASSPYNY-----IFPKPLKSVKGLNVPRIQIHVTKVK----QRRVDNLTEY 195
            FS   DG  S+  ++         PL S     VP   I +T V+     R+  + TEY
Sbjct: 606 -FSSLMDGTVSAASSHNRSVGTSTDPLASSSWEEVPPNNILLTPVQCKSLWRQFKSETEY 664

Query: 194 NV 189
            V
Sbjct: 665 TV 666


>At1g31730.1 68414.m03893 epsilon-adaptin, putative similar to
           SP|Q9UPM8 Adapter-related protein complex 4 epsilon 1
           subunit (Epsilon subunit of AP-4) (AP-4 adapter complex
           epsilon subunit) {Homo sapiens}; contains Pfam profile:
           PF01602 Adaptin N terminal region
          Length = 938

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = +2

Query: 515 ICRLKDKHQHPLITKDEGILKQARKTYLRSNAAFSIDRRAQCQTKTVPAIHH*VANTTRP 694
           ICRL ++   P +      L   +K  +R  A  ++ R      K+  ++ H V+N  + 
Sbjct: 146 ICRLINEETIPAVLPQVVELLNHQKEAVRKKAIMALHR---FHRKSPSSVSHLVSNFRKR 202

Query: 695 SCTNQPG 715
            C N PG
Sbjct: 203 LCDNDPG 209


>At4g39290.1 68417.m05564 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 365

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -1

Query: 511 YRFSTQKLQWSSSIGLVWYLSKPSLTMQQRKL*VPRSKTLRSI-FGTNLILM 359
           YR+S + LQW  S   +W   K      +R +  PR + ++ + +G N++L+
Sbjct: 263 YRYSYEMLQWYDSCRKIW---KNLKGFVRRSIMNPRGEGVKMVNYGGNIVLL 311


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,150,380
Number of Sequences: 28952
Number of extensions: 379318
Number of successful extensions: 932
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1775300800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)