Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g08f
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    31   0.12 
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    29   0.49 
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    26   3.5  
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   4.6  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    26   4.6  
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce...    25   6.1  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   6.1  
SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces pom...    25   6.1  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    25   8.0  
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit...    25   8.0  

>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 31.1 bits (67), Expect = 0.12
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -1

Query: 348 RAQVCCADVKLPSIRPCIVCHPSAEHV--IEAIQDISNDTRFVEIG 217
           R+    AD+KLPS+    V + S  H+   E + D+S+   FVE G
Sbjct: 382 RSPTSAADMKLPSVPVAAVDNKSKTHLDTFEKVVDLSSKADFVEAG 427


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 29.1 bits (62), Expect = 0.49
 Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 3/87 (3%)
 Frame = -1

Query: 405 VYFHERHCINTIEHQVNCLRAQVCCADVKLPS---IRPCIVCHPSAEHVIEAIQDISNDT 235
           +    R C+ T E +  CL    CCA V   S    + CI C  S +  +E   ++   T
Sbjct: 310 ILLSSRKCVLTDEEEPPCLMTADCCAGVAFLSRGAPKNCI-CRVSFKEFLEKNDNVGVQT 368

Query: 234 RFVEIGIYPTRHRAADCNRSILVGQFP 154
             + +   PT   + D N  +L    P
Sbjct: 369 SSIPLNGKPT-SISLDTNDRVLSKSTP 394


>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -2

Query: 401 ISTNATVSIPSNTKLTASVLKSAALTLN 318
           I +N+T+S  S+T +TASV  S+++  N
Sbjct: 85  ILSNSTISTSSSTPITASVPTSSSILSN 112


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 11/56 (19%), Positives = 27/56 (48%)
 Frame = +1

Query: 256 YGFNDVLSRWVAYDTWTYTGKFNVSAADLSTEAVNLVFDGIDTVAFVEINNTPVGS 423
           YGF    S ++A+DT  +  +   ++  ++ E  + ++D +       + N  +G+
Sbjct: 319 YGFITYKSSYIAHDTARHNSRVAGASVSMAPEPSDFLWDNLSLAWSTRLFNRMIGN 374


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
 Frame = -2

Query: 320 NFPVY---VHVSYATHLLSTSLKPYKTSPMIPALLRSVYTPPGTEPRTAIDPFLLVN 159
           NFP++   + +S+A    S +L P K S   PAL   VY      P     PF  +N
Sbjct: 231 NFPLHGVRIQLSWARPP-SMALLPSKQSTYWPALAAPVYPSMKDVPNNPFTPFSPIN 286


>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 315 PSIRPCIVCHPSAEHVIEAIQDISND 238
           PS +  I  HP+A H   A+  ISND
Sbjct: 239 PSTKEFIKMHPNALHPNNALNFISND 264


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +1

Query: 412  PVGSTSSMFVRYVFNVKEQMQIGENVLKITFVSPIEAANIRSQKHFAAPACVPDV 576
            P+ +  S+ V +      + +IGE +LKI  + P EA  I  Q       CV ++
Sbjct: 1862 PIAAHFSILVEHA---DARKRIGEKLLKIMAIQPDEAKAIIQQLSPRQKKCVEEI 1913


>SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
 Frame = -2

Query: 368 NTKLTASVLKSAALTLNFPVYVHVSYATHLLSTS-LKPYK---TSPMIPALLRSVYTPPG 201
           NT L+  V K++A  L      HV      L  S LK +K   T P +P     +YTP  
Sbjct: 183 NTFLSPVVSKASAGALEVFNISHVKNPMVFLRNSVLKGWKVIGTKPALPDNKDQIYTPHK 242

Query: 200 TEPRTAIDPFLLVNFQ*AALKSN 132
            +     +P +LV      L++N
Sbjct: 243 IKTELMNEPKILVLGSEKGLRTN 265


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = -3

Query: 208 HPAQSRGLQSIHSCWS----ISNEQHLNLTAPM*HY*RRTKRQKLATKHTCSFSF 56
           +P Q    +++   W     +SN+Q ++LT P+ +       +K ATK  C   F
Sbjct: 77  NPFQPPVKRAVKEAWDSFEPLSNDQLMDLTCPICYDDMNENDEKQATKMPCGHIF 131


>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
           Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 4/91 (4%)
 Frame = +1

Query: 238 IIGDVLYGFNDVLSRWVAYDTWTYTGKFN----VSAADLSTEAVNLVFDGIDTVAFVEIN 405
           +  +V YGF+D  +R   Y    +T K N    +S      E     F  ID  + + +N
Sbjct: 341 VAANVCYGFDDAQTRNSKYKDSMFTVKTNWNMWLSQVQKINEKEKDKFYEIDEQSILTLN 400

Query: 406 NTPVGSTSSMFVRYVFNVKEQMQIGENVLKI 498
           N+ +      + +          I E +L +
Sbjct: 401 NSEMDKYFQWYEKEFVEENNPNNIPEGILNV 431


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,485,751
Number of Sequences: 5004
Number of extensions: 52158
Number of successful extensions: 180
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)