Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g08f
         (579 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0186 + 18866762-18866949,18867207-18867345,18868068-188682...    35   0.054
03_01_0457 - 3506709-3506717,3507386-3507484,3507701-3508034,350...    29   2.0  
11_04_0460 - 17955102-17955146,17955253-17955310,17955442-179555...    29   2.7  

>05_04_0186 +
           18866762-18866949,18867207-18867345,18868068-18868295,
           18869023-18869081,18869411-18869482,18870239-18870287,
           18870431-18870661,18872018-18872187,18872274-18872478,
           18872826-18873494,18873592-18873819,18873901-18874689
          Length = 1008

 Score = 34.7 bits (76), Expect = 0.054
 Identities = 33/125 (26%), Positives = 53/125 (42%), Gaps = 7/125 (5%)
 Frame = +1

Query: 187 VRGSVPGGVYTDLNKAGIIGDVLYGFNDVLSRWVA------YDTWTYTGKFNVSAADLST 348
           +  +VPG V   L K  +I D  YG N+     +A      Y  W +T       A    
Sbjct: 56  MHAAVPGTVLGTLLKNKLIPDPFYGLNNESIIDIAKSGRGHYTFWFFT---TFQCAPAGH 112

Query: 349 EAVNLVFDGIDTVAFVEINNTPVGSTSSMFVRYVFNVKEQMQ-IGENVLKITFVSPIEAA 525
           + V+L F GI+  A V +N         MF R+  ++ + ++  G+N+L +    P+   
Sbjct: 113 QHVSLNFRGINYSAEVYLNGHKEVLPKGMFRRHTLDITDVLRPDGKNLLAVLVHPPVHPG 172

Query: 526 NIRSQ 540
            I  Q
Sbjct: 173 AIPPQ 177


>03_01_0457 -
           3506709-3506717,3507386-3507484,3507701-3508034,
           3508241-3508443,3508519-3508632,3508707-3508817,
           3508907-3509016,3509132-3509241,3509450-3509628,
           3509746-3509907,3509996-3510114,3510336-3510423,
           3510520-3510625,3510769-3510857,3511211-3511354,
           3511459-3511518,3511534-3511656,3511745-3511811,
           3511941-3512053,3512140-3512235,3512651-3512818
          Length = 867

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 163 TNKNGSIAVRGSVPG-GVYTDLNKAGIIGDVLYGFNDVLSRWVAYDTWTY 309
           TNK   ++V   +P  GV+ +    G++G V+    D  SR + + TW+Y
Sbjct: 565 TNKVALLSVACGLPNVGVHYETWNTGVVGPVVIHGLDEGSRDLTWQTWSY 614


>11_04_0460 - 17955102-17955146,17955253-17955310,17955442-17955593,
            17955888-17955993,17956101-17956222,17956766-17956834,
            17956969-17957214,17957331-17957373,17957449-17957520,
            17957954-17958066,17958158-17958238,17958343-17958415,
            17959413-17959519,17960410-17960514,17960684-17960974,
            17961621-17961707,17961774-17961842,17961917-17961973,
            17962057-17962155,17962223-17962312,17962395-17962511,
            17964164-17964244,17964353-17964502,17964812-17964956,
            17967359-17967510,17967647-17967784,17967838-17967914,
            17968032-17968134
          Length = 1015

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -1

Query: 573  IRDTGWCCEMFL--RSDICSFNWRHKSNFQNIFAYL 472
            IR+ G C ++    +  IC++NW  +  F++IF ++
Sbjct: 978  IREIGKCIKLQQAHKGKICTWNWEFEDEFEDIFQFI 1013


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,975,194
Number of Sequences: 37544
Number of extensions: 342891
Number of successful extensions: 839
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)