Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner10g08f
         (579 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_979| Best HMM Match : No HMM Matches (HMM E-Value=.)                99   1e-21
SB_39508| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   2.7  
SB_43283| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_40095| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_24958| Best HMM Match : S-methyl_trans (HMM E-Value=1.6e-40)        29   3.6  
SB_48422| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_51604| Best HMM Match : I-set (HMM E-Value=2.3e-21)                 28   6.3  
SB_11898| Best HMM Match : DMP1 (HMM E-Value=1.6)                      28   6.3  
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)        27   8.4  
SB_16793| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  

>SB_979| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score =   99 bits (238), Expect = 1e-21
 Identities = 46/108 (42%), Positives = 70/108 (64%)
 Frame = +1

Query: 223 LNKAGIIGDVLYGFNDVLSRWVAYDTWTYTGKFNVSAADLSTEAVNLVFDGIDTVAFVEI 402
           L K+G IGD  +  NDV  RW+AYD WT++  F+VS   L  +   LV +G+DTVA V +
Sbjct: 3   LYKSGTIGDPYFRLNDVNYRWIAYDNWTFSRTFDVSEKVLLKDKAVLVCNGLDTVANVSV 62

Query: 403 NNTPVGSTSSMFVRYVFNVKEQMQIGENVLKITFVSPIEAANIRSQKH 546
           N   VG + SMF++YVF+VK  +++G+N + ++F S I  A  +S ++
Sbjct: 63  NGKIVGQSKSMFLQYVFDVKHAIKVGQNTIDVSFTSAITYAKTKSLQY 110


>SB_39508| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1814

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
 Frame = -1

Query: 363 QVNCLRAQVCCADV-----KLPSIRPCIVCHPSAEHVIEAIQDI 247
           +V+C+R  + C  V     ++ S+RPCIVC PS   V   +  +
Sbjct: 316 RVSCVRPCIVCPSVYRLSVRVSSVRPCIVC-PSVYRVSVRVSSV 358


>SB_43283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 278

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = -2

Query: 401 ISTNATVSIPSNTKLTASVLKSAALTLNFPVYVHVSYATHLLSTSLKPYKTSPM 240
           + T  T S P +T LTAS       T + PV      AT + +T   P  T+P+
Sbjct: 196 VDTTLTASSPVDTTLTASSPVETTPTASPPVKTTPLAATPVYATPTAPELTTPL 249


>SB_40095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 789

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 12/125 (9%)
 Frame = +1

Query: 118 VTSVRLDLSAAHWKLTNKNGSIAVRGSVPG---GVYTDL--NKAGIIGDVLYGFNDVLSR 282
           V SV    S++ ++    N +  +  S  G    VY  L  N    I     G    L  
Sbjct: 375 VLSVNATTSSSTYETVAVNTTTTISPSPNGTISSVYETLAVNATPTISPSPNGTTSSLYE 434

Query: 283 WVAYDTWTYTGKFNVSAADLSTE-------AVNLVFDGIDTVAFVEINNTPVGSTSSMFV 441
            +A ++ T +  F  +A + +T          + V++ ID  +   I+ +P G+TSSM+V
Sbjct: 435 TIAVNSTTSSSPFETAAVNATTTIFPSPNGTTSSVYETIDVKSTPSISPSPNGTTSSMYV 494

Query: 442 RYVFN 456
               N
Sbjct: 495 TIAVN 499


>SB_24958| Best HMM Match : S-methyl_trans (HMM E-Value=1.6e-40)
          Length = 560

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 253 LYGFNDVLSRWVAYDTWTYTG 315
           LY  N  L  WV Y TWT  G
Sbjct: 55  LYSVNVCLCEWVPYSTWTLEG 75


>SB_48422| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 111

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -1

Query: 429 ARATNWGIVYFHE-RHCINTIEHQVNCLRAQVCCADVKLPSIRPCIVC 289
           AR  +W    F + R C  T   ++ CL+     + + L  IRPC  C
Sbjct: 49  ARRLSWVTPGFSQSRRCKTTASAKLACLQVDSRGSPIPLIKIRPCQTC 96


>SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2671

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 17   IDCWYTTFSSPENK*K*TRVFCCKLLSFCSTSIMLHRC 130
            + CW      P+ + K  R+ C +L S C+ S+  + C
Sbjct: 1769 LHCWVRKSRLPKGRRKSKRIQCGRLRSVCTPSVWENHC 1806


>SB_51604| Best HMM Match : I-set (HMM E-Value=2.3e-21)
          Length = 152

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 160 LTNKNGSIAVRGSVPGGVYT 219
           L + +GS+ +RG+  GGVYT
Sbjct: 3   LIDNSGSLTIRGATEGGVYT 22


>SB_11898| Best HMM Match : DMP1 (HMM E-Value=1.6)
          Length = 1705

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 17  IDCWYTTFSSPENK*K*TRVFCCKLLSFCSTSIMLHRC 130
           + CW      P+ + K  R+ C +L S C+ S+  + C
Sbjct: 81  LHCWVRKSRLPKGRRKSKRIQCGRLRSVCTPSVWENHC 118


>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
          Length = 1960

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
 Frame = -2

Query: 386  TVSIPSNTKLT-ASVLKSAALTLNFPVYV--------HVSYATHLLSTSLKPYKTSPMIP 234
            + S+P NT L  A    S A T   P YV         VS    LLST+L P  ++ M+P
Sbjct: 1108 STSVPYNTTLIPAPNATSTAATTMSPSYVANMTTLDSSVSLTRSLLSTTLIPSISTSMLP 1167

Query: 233  ALLRSVYTPPGTEPRTA 183
                 + TP  T   T+
Sbjct: 1168 YNTTVIATPNTTRLATS 1184


>SB_16793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 462

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 15/54 (27%), Positives = 21/54 (38%)
 Frame = -1

Query: 576 YIRDTGWCCEMFLRSDICSFNWRHKSNFQNIFAYLHLFLDIKHVSHEHTARATN 415
           YI    WCC  F  S      W+ +   QN  AY ++   +  +     A A N
Sbjct: 62  YIVIIAWCCYFFFISFTSDLPWKKQLLCQNWEAYDNIKSQMNTIQSAGNATANN 115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,759,422
Number of Sequences: 59808
Number of extensions: 403868
Number of successful extensions: 1439
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1438
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)